View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1016_high_5 (Length: 251)

Name: NF1016_high_5
Description: NF1016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1016_high_5
NF1016_high_5
[»] chr1 (16 HSPs)
chr1 (8-223)||(11028355-11028570)
chr1 (1-223)||(10974386-10974608)
chr1 (1-223)||(11033321-11033543)
chr1 (1-223)||(11004770-11004992)
chr1 (1-223)||(10914729-10914951)
chr1 (1-223)||(11007868-11008090)
chr1 (1-223)||(11011030-11011252)
chr1 (1-181)||(10903566-10903746)
chr1 (1-111)||(10979464-10979574)
chr1 (116-223)||(10983769-10983876)
chr1 (40-95)||(9318166-9318221)
chr1 (37-95)||(8873944-8874002)
chr1 (37-95)||(8964688-8964746)
chr1 (30-110)||(8999832-8999912)
chr1 (11-95)||(9320052-9320136)
chr1 (11-95)||(9350369-9350453)
[»] chr4 (1 HSPs)
chr4 (54-100)||(27692613-27692659)
[»] chr6 (1 HSPs)
chr6 (40-158)||(15927009-15927127)
[»] chr8 (1 HSPs)
chr8 (21-65)||(1901520-1901564)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 11028570 - 11028355
Alignment:
Q  8 ctgtaggacaaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaatttt 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11028570 ctgtaggacaaagtctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaatttt 11028471  T
Q  108 catattatatccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataattactctcttcaatatga 207  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11028470 catattacatccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataattactctcttcaatatga 11028371  T
Q  208 gaaaatatatattttt 223  Q
    ||||||||||||||||    
T  11028370 gaaaatatatattttt 11028355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10974386 - 10974608
Alignment:
Q  1 cttttatctgtaggacaaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 100  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||    
T  10974386 cttttatctgtaggacaaagtctagcaagtccaaaatcagaaacttttggattgaaatattcatcaagaaggatggtatgaggctttatatcaaagtgta 10974485  T
Q  101 gaattttcatattatatccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataattactctcttc 200  Q
    |||||||||||| | |||||||||| ||||||||||| || | ||| || ||||||||||| |||||||||||||| |||| |||  |||||||||||||    
T  10974486 gaattttcatatcacatccattatgaaagtactcaattccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctcttc 10974585  T
Q  201 aatatgagaaaatatatattttt 223  Q
    ||| ||||||||||| |||||||    
T  10974586 aatgtgagaaaatatgtattttt 10974608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11033321 - 11033543
Alignment:
Q  1 cttttatctgtaggacaaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 100  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||    
T  11033321 cttttatctgtaggacaaagtctagctagtccaaaatcagaaacttttgggttgaaattctcatcaagaaggatgttatgaggctttatgtcaaagtgta 11033420  T
Q  101 gaattttcatattatatccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataattactctcttc 200  Q
    ||||||||||||   ||||||||||||||||||||||||||| ||| |||||||||||||| | || ||||| |||||||| |||  ||| | | |||||    
T  11033421 gaattttcatatcgcatccattatgcaagtactcaatgcctcgagccactccaagagaaattgaatacaattgttcgcaactcaaggaataattttcttc 11033520  T
Q  201 aatatgagaaaatatatattttt 223  Q
    | ||||||||||||| |||||||    
T  11033521 attatgagaaaatatgtattttt 11033543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11004992 - 11004770
Alignment:
Q  1 cttttatctgtaggacaaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 100  Q
    ||||| ||||||||| ||| |||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  11004992 cttttgtctgtaggagaaaccctagctaatccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgta 11004893  T
Q  101 gaattttcatattatatccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataattactctcttc 200  Q
    |||||||||||||  ||||||||||||||||  |||| |||| ||| || ||||||||||| |||| ||||||||  |||| |||| | |||||||||||    
T  11004892 gaattttcatattgcatccattatgcaagtatgcaatacctcgagctacaccaagagaaatggcatacaattttttacaactcaaagagttactctcttc 11004793  T
Q  201 aatatgagaaaatatatattttt 223  Q
    |||| |||||||||| |||||||    
T  11004792 aataagagaaaatatgtattttt 11004770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10914729 - 10914951
Alignment:
Q  1 cttttatctgtaggacaaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 100  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  10914729 cttttatctgtaggagaaagcctggctagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgta 10914828  T
Q  101 gaattttcatattatatccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataattactctcttc 200  Q
    |||||||||||||  ||||||| ||||||||||||||||| | ||| |||||||||||||| | || ||||| ||||||||  ||  ||| | ||||||     
T  10914829 gaattttcatattgcatccattgtgcaagtactcaatgccacgagccactccaagagaaattgaatacaattgttcgcaacttaaggaataattctcttt 10914928  T
Q  201 aatatgagaaaatatatattttt 223  Q
      ||||||||||||| |||||||    
T  10914929 tgtatgagaaaatatgtattttt 10914951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11007868 - 11008090
Alignment:
Q  1 cttttatctgtaggacaaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 100  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  11007868 cttttatctgtaggacaaagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatgtcaaagtgta 11007967  T
Q  101 gaattttcatattatatccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataattactctcttc 200  Q
    |||||||||||||  ||||||| ||||||||||||||||| | ||| |||||||| ||||| | || ||||| |||||||| |||  ||| | |||||||    
T  11007968 gaattttcatattgcatccattgtgcaagtactcaatgccacgagccactccaagtgaaattgaatacaattgttcgcaactcaaggaataattctcttc 11008067  T
Q  201 aatatgagaaaatatatattttt 223  Q
      ||||||||||||| |||||||    
T  11008068 ggtatgagaaaatatgtattttt 11008090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11011030 - 11011252
Alignment:
Q  1 cttttatctgtaggacaaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 100  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  11011030 cttttatctgtaggacaaagtctagctagtccaaaatcagaaacttttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaagtgta 11011129  T
Q  101 gaattttcatattatatccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataattactctcttc 200  Q
    |||||||||||||  |||||| |||||||||||||||||| | ||| |||||||||||||| | || ||||| ||||||||  ||  ||| | ||||||     
T  11011130 gaattttcatattgcatccatgatgcaagtactcaatgccacgagccactccaagagaaattgaatacaattgttcgcaacttaaggaataattctcttt 11011229  T
Q  201 aatatgagaaaatatatattttt 223  Q
      ||||||||||||| |||||||    
T  11011230 tgtatgagaaaatatgtattttt 11011252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 10903566 - 10903746
Alignment:
Q  1 cttttatctgtaggacaaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 100  Q
    ||||||||||||||| |||| || || ||||| |||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||    
T  10903566 cttttatctgtaggagaaagtctggcaagtccaaaatcagaaacttttggattgaaactttcatcaagaagaatgttatgaggctttatatcaaagtgta 10903665  T
Q  101 gaattttcatattatatccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaac 181  Q
    ||||||||| |||  |||| |||||||||||| ||||||||| ||| ||| ||| |||||| |||| ||| ||||| ||||    
T  10903666 gaattttcacattgcatccgttatgcaagtacgcaatgcctcgagccacttcaacagaaatggcatacaacttttcacaac 10903746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 10979464 - 10979574
Alignment:
Q  1 cttttatctgtaggacaaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 100  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  10979464 cttttatctgtaggacaaagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgta 10979563  T
Q  101 gaattttcata 111  Q
    |||||||||||    
T  10979564 gaattttcata 10979574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 10983769 - 10983876
Alignment:
Q  116 atccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataattactctcttcaatatgagaaaatat 215  Q
    ||||||||||||||||||||||||| | ||| || ||||||||||| |||||||||||||| |||| |||  |||||||||||||| |||||||||||||    
T  10983769 atccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctcttcattatgagaaaatat 10983868  T
Q  216 atattttt 223  Q
     |||||||    
T  10983869 gtattttt 10983876  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 9318221 - 9318166
Alignment:
Q  40 gaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaa 95  Q
    |||||||| ||| |||| ||||||||||||||||||||||| ||||| ||||||||    
T  9318221 gaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaa 9318166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 8874002 - 8873944
Alignment:
Q  37 tcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaa 95  Q
    ||||| ||||| ||| |||| |||||||||||||||||||| |||||||| ||||||||    
T  8874002 tcagagactttcggagtaaagttctcatcaagaaggatgttgtgaggcttaatatcaaa 8873944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 8964688 - 8964746
Alignment:
Q  37 tcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaa 95  Q
    ||||| ||||||||  | ||||||||||||||||||||||| |||||||| ||||||||    
T  8964688 tcagagacttttggggtgaaattctcatcaagaaggatgttgtgaggcttaatatcaaa 8964746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 8999832 - 8999912
Alignment:
Q  30 tccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcat 110  Q
    |||||| ||||| ||||||||  | || || ||||||||||||||||| |||||||| |||||||| |||| ||| |||||    
T  8999832 tccgaagtcagagacttttggtgtgaagttttcatcaagaaggatgttgtgaggcttgatatcaaaatgtaaaatcttcat 8999912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 9320052 - 9320136
Alignment:
Q  11 taggacaaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaa 95  Q
    ||||| ||||| |||| || || || || |||||||| ||  |||| ||||||||||||||||||||||| ||||| ||||||||    
T  9320052 taggataaagcttagcaagaccaaagtctgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaa 9320136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 9350369 - 9350453
Alignment:
Q  11 taggacaaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaa 95  Q
    ||||| ||||| |||| || || || || |||||||| ||  |||| ||||||||||||||||||||||| ||||| ||||||||    
T  9350369 taggataaagcttagcaagaccaaagtctgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaa 9350453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 27692613 - 27692659
Alignment:
Q  54 aaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 100  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||||||    
T  27692613 aaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 27692659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 15927127 - 15927009
Alignment:
Q  40 gaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattatatccattatgcaagtactcaatgc 139  Q
    |||||||| ||  |||| ||||||||||||||||||||||| ||||| || ||||| || | ||||| ||| ||| |||| | ||| |||||  | || |    
T  15927127 gaaactttggggataaagttctcatcaagaaggatgttatggggcttgatgtcaaaatgcaaaatttgcatgttacatccttgatgtaagtaagccatac 15927028  T
Q  140 ctcaagcaactccaagaga 158  Q
    | | |||||||||||||||    
T  15927027 cacgagcaactccaagaga 15927009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 1901564 - 1901520
Alignment:
Q  21 cctagctagtccgaaatcagaaacttttggattaaaattctcatc 65  Q
    |||||| |||||||||||||||| |||||| |||||||| |||||    
T  1901564 cctagcgagtccgaaatcagaaagttttggcttaaaattttcatc 1901520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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