View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1016_low_1 (Length: 469)
Name: NF1016_low_1
Description: NF1016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1016_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 29 - 457
Target Start/End: Complemental strand, 53298621 - 53298208
Alignment:
| Q |
29 |
aaaatgcacacccaacaacaagctttaaataaaagttcacaaatctcatgtttttcaaatggtgggt----actaatgaatatttatttgatttattaat |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53298621 |
aaaatgcacaccccacaacaagctttaaataaaagtaaaaaaatctcatgtttttcaaatggtgggtgggtactaatgaatatttatttgatttattaat |
53298522 |
T |
|
| Q |
125 |
ttttatcactgcaaagatatttcaattagaaataagattacgtgaggtactcaacccatttacaactcaaagcctatttaaaagggaataaacaagggga |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
53298521 |
ttttatcactgcaaagatatttcaattagaaataagattacgtgaggtactcaacccatttacaactcaaagcctatttaaaacggaataaacaagggaa |
53298422 |
T |
|
| Q |
225 |
aagaaaagnnnnnnnnntcccccaaaatatggttaaaattaggaccttaaagactttagaaatggttcatgagatttatcctccatgaccgaattcgaga |
324 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53298421 |
aaaaaa-----------tcccccaaaatatggttaaaattaggaccttaatgactttagaaatggttcatgagatttatcctccatgaccgaattcgaga |
53298333 |
T |
|
| Q |
325 |
ctatcctctcatcctttatcgattagatagccaaaatatgtttaaatttgattaacttgtgtacaagacctccataacctaaatgggagattatgctctc |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53298332 |
ctatcctctcatcctttatcgattagatagccaaagtatgtttaaatttgattaacttgtgtacaagacctccataacctaaatgagagatt-------- |
53298241 |
T |
|
| Q |
425 |
attccttattgcttaaatagcctagatgatatt |
457 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
53298240 |
attccttattgcttaaatagcctaaatgatatt |
53298208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University