View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1016_low_10 (Length: 251)
Name: NF1016_low_10
Description: NF1016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1016_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 26411499 - 26411613
Alignment:
| Q |
138 |
ttttgccaacgatagctctctatttttcttttatcatcgcacgctca-tcactgcttttgcaattctccattccacccgaaggtacttcagattttcttt |
236 |
Q |
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| T |
26411499 |
ttttgccaacaatcgctctctatttttcttttatcaccacacgctccctccctgcttttgcaattctccattccactcgaaggtactttagattttcttt |
26411598 |
T |
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| Q |
237 |
ctcaataattgtcat |
251 |
Q |
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| T |
26411599 |
cttgataattgtcat |
26411613 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 11018623 - 11018704
Alignment:
| Q |
138 |
ttttgccaacgatagctctctatttttcttttatcatcgcacgct-catcactgcttttgcaattctccattccacccgaag |
218 |
Q |
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| T |
11018623 |
ttttgccaacaatcactctctattttttttttatcattgcacgctacctccctgcttttgcaattctccattccacacgaag |
11018704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 11019197 - 11019236
Alignment:
| Q |
212 |
cccgaaggtacttcagattttctttctcaataattgtcat |
251 |
Q |
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| T |
11019197 |
cccgaaggtacttcagattttctttctcaataattgtcat |
11019236 |
T |
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