View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1016_low_13 (Length: 233)
Name: NF1016_low_13
Description: NF1016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1016_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31523573 - 31523793
Alignment:
| Q |
1 |
ccaagacaaaacagttggcgctgccctaagctccaatgtccaccttcagcactcactgcaaatgatgtcaaaattagatttcaatgaagggcttattggt |
100 |
Q |
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| T |
31523573 |
ccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatcactcactgcaaatgatgtcaaaattagatttcaatgaagggcttattggt |
31523672 |
T |
|
| Q |
101 |
tgcaaaaccctctgatggaaggcgtgtttggtgtccgacacgacacaagtgattacattcaattaattaannnnnnnnnnnnnnnatcagtgtttatgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31523673 |
tgcaaaaccctctgatggaaggcgtgtttggtgtccgacacgacacaagtgattacattcaattaattaattttttaaattttttatcagtgtttatgtg |
31523772 |
T |
|
| Q |
201 |
ccagtgtcgtgtccggtgtct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31523773 |
ccagtgtcgtgtccggtgtct |
31523793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5279404 - 5279465
Alignment:
| Q |
1 |
ccaagacaaaacagttggcgctgccctaagctccaatgtccaccttcagcactcactgcaaa |
62 |
Q |
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| T |
5279404 |
ccaaggcaaaacagttgccgctgtcctaagctccaatttccaccttcatcactcactgcaaa |
5279465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 14946411 - 14946466
Alignment:
| Q |
7 |
caaaacagttggcgctgccctaagctccaatgtccaccttcagcactcactgcaaa |
62 |
Q |
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| T |
14946411 |
caaaacaattggcgttgtcccaagctccaatttccaccttcatcactcactgcaaa |
14946466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5316691 - 5316630
Alignment:
| Q |
1 |
ccaagacaaaacagttggcgctgccctaagctccaatgtccaccttcagcactcactgcaaa |
62 |
Q |
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||||||||||||| ||| | || || |||||||||| |||||||||| ||||||||||||| |
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|
| T |
5316691 |
ccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatcactcactgcaaa |
5316630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 38957321 - 38957375
Alignment:
| Q |
115 |
atggaaggcgtgtttggtgtccgacac-gacacaagtgattacattcaattaatt |
168 |
Q |
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| T |
38957321 |
atggaaggcgtgtctagtgtacgacactgacacatgtgattacattcaattaatt |
38957375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 683115 - 683081
Alignment:
| Q |
131 |
gtgtccgacacgacacaagtgattacattcaatta |
165 |
Q |
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| T |
683115 |
gtgtccgacacgacacatgtgattacattcaatta |
683081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 38612911 - 38612960
Alignment:
| Q |
119 |
aaggcgtgtttggtgtccgacacgacacaagtgattacattcaattaatt |
168 |
Q |
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||||| ||||||||||||||||||||||| | || |||||||| |||||| |
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| T |
38612911 |
aaggcatgtttggtgtccgacacgacacatgcgagtacattcagttaatt |
38612960 |
T |
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