View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1016_low_2 (Length: 415)
Name: NF1016_low_2
Description: NF1016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1016_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 105 - 292
Target Start/End: Original strand, 35347657 - 35347844
Alignment:
| Q |
105 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattatttacc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35347657 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattgtttacc |
35347756 |
T |
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| Q |
205 |
ttgaattcatcccaattttatgtctctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttccc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35347757 |
ttgaattcatcccaattttatgtctctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttccc |
35347844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 35347922 - 35347967
Alignment:
| Q |
370 |
ggaatcagtggaaaatttatttactttactttcattcatcttatat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35347922 |
ggaatcagtggaaaatttatttactttactttcattcatcttatat |
35347967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 105 - 292
Target Start/End: Original strand, 2274715 - 2274902
Alignment:
| Q |
105 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattatttacc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2274715 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattgtttacc |
2274814 |
T |
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| Q |
205 |
ttgaattcatcccaattttatgtctctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttccc |
292 |
Q |
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| T |
2274815 |
ttgaattcatcccaattttatgtctctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttccc |
2274902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 2274980 - 2275025
Alignment:
| Q |
370 |
ggaatcagtggaaaatttatttactttactttcattcatcttatat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274980 |
ggaatcagtggaaaatttatttactttactttcattcatcttatat |
2275025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 105 - 292
Target Start/End: Original strand, 39346205 - 39346392
Alignment:
| Q |
105 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattatttacc |
204 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39346205 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattgtttacc |
39346304 |
T |
|
| Q |
205 |
ttgaattcatcccaattttatgtctctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttccc |
292 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39346305 |
ttgaattcatcccaattttatgtctctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttccc |
39346392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 39346470 - 39346515
Alignment:
| Q |
370 |
ggaatcagtggaaaatttatttactttactttcattcatcttatat |
415 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39346470 |
ggaatcagtggaaaatttatttactttactttcattcatcttatat |
39346515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 105 - 292
Target Start/End: Original strand, 4012049 - 4012236
Alignment:
| Q |
105 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattatttacc |
204 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
4012049 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagccgggtgctctgatggttggcaaaaatgaaattgtttacc |
4012148 |
T |
|
| Q |
205 |
ttgaattcatcccaattttatgtctctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttccc |
292 |
Q |
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| T |
4012149 |
ttgaattcatcccaattttatgtctctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttccc |
4012236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 107 - 279
Target Start/End: Original strand, 25875738 - 25875910
Alignment:
| Q |
107 |
tggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattatttacctt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
25875738 |
tggtgagtggaaaaagatgatagctgcgcgcagaatttgtgaagctgcacaaatcaagttgggtgctctgatggttggcaaaaatgaaattgtttacctt |
25875837 |
T |
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| Q |
207 |
gaattcatcccaattttatgtctctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattg |
279 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25875838 |
gaatttatcccaattttatgtctctgcatgctactgtttcgtgtgcaggtgacttttcaaggtgaatctattg |
25875910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 4012314 - 4012359
Alignment:
| Q |
370 |
ggaatcagtggaaaatttatttactttactttcattcatcttatat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4012314 |
ggaatcagtggaaaatttatttactttactttcattcatcttatat |
4012359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 25879198 - 25879243
Alignment:
| Q |
370 |
ggaatcagtggaaaatttatttactttactttcattcatcttatat |
415 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
25879198 |
ggaattagtggaatatttatttactttactttcattcatcttatat |
25879243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 105 - 258
Target Start/End: Complemental strand, 10790350 - 10790197
Alignment:
| Q |
105 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattatttacc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
10790350 |
gctggtgagtggaaaaagatgatagctgcatgtagaatttgtgaagctgcacaaatcaagttgggtgctctgatggttggcaaaaatgaaattgtttacc |
10790251 |
T |
|
| Q |
205 |
ttgaattcatcccaattttatgtctctgcatgctactgttttgtgtgcaggtga |
258 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
10790250 |
ttgaattcatcccaattttatgtctctgcatgctactgtttcgtgtgcaggtga |
10790197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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