View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1016_low_3 (Length: 402)
Name: NF1016_low_3
Description: NF1016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1016_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 71 - 394
Target Start/End: Complemental strand, 43060129 - 43059805
Alignment:
| Q |
71 |
ttgtggtatatatcataggaatgatggaggaaaaggcatcttatgtatagaagttatggaagcaagggagagcaagtacattgaagatatgaagagcaac |
170 |
Q |
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| T |
43060129 |
ttgtggtatatatcataggaatgatggaggaaaaggcatcttatatatagaagttatggaagcaaggcagagcaagtacattgaagatatgaagagcaac |
43060030 |
T |
|
| Q |
171 |
caatttgtgaaaattttgtcccaaacacatgtcaaaggagacatttggaccctacgaaaagtgaagaaagatggtgcatgttaaataggtgaaacatcca |
270 |
Q |
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| T |
43060029 |
caatttgtgaaaattttgtcccaaacacatgtcaaaggagacatttggaccctacgaaaagtgaagaaagatggtgcatgttaaataggtgaaacatcca |
43059930 |
T |
|
| Q |
271 |
ccattacaga-ggtctaaaatcttgatttatcaagggttnnnnnnnnnnnnnnttatgagacatttggaggagaaaacgaaattacatcttcttcatcaa |
369 |
Q |
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| T |
43059929 |
ccattattgagggtctaaaatcttgatttatcaagggttaaaaaaattaaaaattatgagacatttggaggagaaaacgaaattacatcttcttcatcta |
43059830 |
T |
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| Q |
370 |
taaatagatcagctatagaataatc |
394 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
43059829 |
taaatagatcagctatagaataatc |
43059805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 7222692 - 7222625
Alignment:
| Q |
7 |
ggtagttccactccttattattagcattcagtttcttaattctttgctgtatatattcgtgtaattgt |
74 |
Q |
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| T |
7222692 |
ggtagttccactccttattattagcattcagtttctcaattctttgctgtatatattcgtgtaattgt |
7222625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 7227113 - 7227046
Alignment:
| Q |
7 |
ggtagttccactccttattattagcattcagtttcttaattctttgctgtatatattcgtgtaattgt |
74 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7227113 |
ggtagttccactccttattattagcattcagtttctcaattctttgctgtatatattcgtgtaattgt |
7227046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 14788680 - 14788613
Alignment:
| Q |
7 |
ggtagttccactccttattattagcattcagtttcttaattctttgctgtatatattcgtgtaattgt |
74 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |
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| T |
14788680 |
ggtagttccactccttattattagcattcagtttctcaattctttgttgtatatattcatgtaattgt |
14788613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 42605804 - 42605737
Alignment:
| Q |
7 |
ggtagttccactccttattattagcattcagtttcttaattctttgctgtatatattcgtgtaattgt |
74 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
42605804 |
ggtagttccactccttattattagcattcagtttctcaattctttgctgtatatattcatgtaattgt |
42605737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 27726048 - 27725981
Alignment:
| Q |
7 |
ggtagttccactccttattattagcattcagtttcttaattctttgctgtatatattcgtgtaattgt |
74 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |
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| T |
27726048 |
ggtagttccactccttattattagcattcagtttctcaattctttgcggtatatattcatgtaattgt |
27725981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 27721628 - 27721562
Alignment:
| Q |
7 |
ggtagttccactccttattattagcattcagtttcttaattctttgctgtatatattcgtgtaattgt |
74 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| ||||||||| |
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| T |
27721628 |
ggtagttccactccttattattag-attcagtttctcaattttttgctgtatatattcatgtaattgt |
27721562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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