View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1016_low_5 (Length: 336)
Name: NF1016_low_5
Description: NF1016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1016_low_5 |
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| [»] chr4 (13 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 54 - 336
Target Start/End: Original strand, 7142482 - 7142767
Alignment:
| Q |
54 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
153 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
7142482 |
caaacaacaatttaagtggtttgcttccagaagatattggtatattccttcctagtgttgactatctgaacttttcattgaatagctttcaaggaaatat |
7142581 |
T |
|
| Q |
154 |
accttcatcaattggtatgatgaaacaccttgatcatttctcggatgagttacctaaacaattggccaaagattgtaatagtttaaacaccttgatcctc |
253 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7142582 |
accttaatcaattggtatgatgaaacaccttgatcatttctcgggtgagttacctaaacaattggccaaagattgtgatagtttaaacaccttgatcctc |
7142681 |
T |
|
| Q |
254 |
tccaacaactttctaagtggtaatattcctaaattttatatttc---aatgtatttgaaaactttatttctcaataataacaactt |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
7142682 |
tccaacaactttctaagtggtaatattcctaaattttatatttcaataatgtatttgggaactttatttctcaataataacaactt |
7142767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 5182545 - 5182677
Alignment:
| Q |
54 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
153 |
Q |
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|
||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||| |
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| T |
5182545 |
caaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttaagtatttgaacttttcatggaatagctttgaaggaaatat |
5182644 |
T |
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| Q |
154 |
accttcatcaattggtatgatgaaacaccttga |
186 |
Q |
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||||||||||||||||| ||||||||| ||||| |
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|
| T |
5182645 |
accttcatcaattggtaagatgaaacaacttga |
5182677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 5195945 - 5196071
Alignment:
| Q |
54 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
153 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
5195945 |
caaacaacaatttgagtggtttgcttccaaaagatatcggtatattccttcctaatgttacctatttgaacttttcatggaatagctttgaaggaaatat |
5196044 |
T |
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| Q |
154 |
accttcatcaattggtatgatgaaaca |
180 |
Q |
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||||||||||||||||| ||||||||| |
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| T |
5196045 |
accttcatcaattggtaagatgaaaca |
5196071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 4842312 - 4842188
Alignment:
| Q |
54 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
153 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||| |||| ||||||||||||||| |
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| T |
4842312 |
caaacaacaattttagtggtttgcttccagaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatat |
4842213 |
T |
|
| Q |
154 |
accttcatcaattggtatgatgaaa |
178 |
Q |
| |
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||||||||||||| ||| ||||||| |
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| T |
4842212 |
accttcatcaatttgtaagatgaaa |
4842188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 58 - 336
Target Start/End: Original strand, 5214106 - 5214405
Alignment:
| Q |
58 |
caacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatatacct |
157 |
Q |
| |
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||||| ||||||| |||| |||||| ||||||||||||||||||||||||| ||| |||| |||| ||||||| |||| ||||||||||||||||||| |
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| T |
5214106 |
caacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatatacct |
5214205 |
T |
|
| Q |
158 |
tcatcaattggtatgatgaaacaccttg---------------------atcatttctcggatgagttacctaaacaattggccaaagattgtaatagtt |
236 |
Q |
| |
|
||||||||||||| ||||||| | |||| |||||||||| | |||||||||||||||| |||||| || |||| ||| || |
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| T |
5214206 |
tcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagttacctaaacaactggccacaggttgtgataatt |
5214305 |
T |
|
| Q |
237 |
taaacaccttgatcctctccaacaactttctaagtggtaatattcctaaattttatatttcaatgtatttgaaaactttatttctcaataataacaactt |
336 |
Q |
| |
|
|| | ||||| |||||||||||||||||| ||| || |||||||||||||||| ||| ||| || || || |||||||||||||||||||||||| |
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| T |
5214306 |
tacaatacttgaagctctccaacaactttctacatgggaacattcctaaattttataattccatgaatgtggaatttttatttctcaataataacaactt |
5214405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 4856786 - 4856686
Alignment:
| Q |
54 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
153 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||| |
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| T |
4856786 |
caaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttacctatttgaacatttcatggaatagctttgaaggaaatat |
4856687 |
T |
|
| Q |
154 |
a |
154 |
Q |
| |
|
| |
|
|
| T |
4856686 |
a |
4856686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 5173216 - 5173334
Alignment:
| Q |
54 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
153 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| ||||||||| || || |||| |||||||||||||||||||||||||||||||||| |
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| T |
5173216 |
caaacaacaattttagtggtttgcttccagaagatat------attccttccaagtattacctatttgaacttttcatggaatagctttgaaggaaatat |
5173309 |
T |
|
| Q |
154 |
accttcatcaattggtatgatgaaa |
178 |
Q |
| |
|
||||||||||||||||| ||||||| |
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| T |
5173310 |
accttcatcaattggtaagatgaaa |
5173334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 5160366 - 5160416
Alignment:
| Q |
120 |
tgaacttttcatggaatagctttgaaggaaatataccttcatcaattggta |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160366 |
tgaacttttcatggaatagctttgaaggaaatataccttcatcaattggta |
5160416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 4842159 - 4842056
Alignment:
| Q |
186 |
atcatttctcggatgagttacctaaacaattggccaaagattgtaatagtttaaacaccttgatcctctccaacaactttctaagtggtaatattcctaa |
285 |
Q |
| |
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|||||||||| | |||||||||||||||| ||||| |||||| |||| |||| | |||||| ||||||||||||| |||| |||| ||||||||||| |
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| T |
4842159 |
atcatttctcaggtgagttacctaaacaactggccgcagattgcaataatttacaatacttgattctctccaacaactctctatgtgggaatattcctaa |
4842060 |
T |
|
| Q |
286 |
attt |
289 |
Q |
| |
|
|||| |
|
|
| T |
4842059 |
attt |
4842056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 290
Target Start/End: Original strand, 5160453 - 5160557
Alignment:
| Q |
186 |
atcatttctcggatgagttacctaaacaattggccaaagattgtaatagtttaaacaccttgatcctctccaacaactttctaagtggtaatattcctaa |
285 |
Q |
| |
|
|||||||||||| ||||||||| |||||| |||||| ||||| | |||||||| |||| | ||||| ||||||||||||||||||||||||| || |
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| T |
5160453 |
atcatttctcgggtgagttaccaaaacaactggccacagattctgatagtttactatacttgtccgtctccgacaactttctaagtggtaatattcccaa |
5160552 |
T |
|
| Q |
286 |
atttt |
290 |
Q |
| |
|
||||| |
|
|
| T |
5160553 |
atttt |
5160557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 5173366 - 5173466
Alignment:
| Q |
189 |
atttctcggatgagttacctaaacaattggccaaagattgtaatagtttaaacaccttgatcctctccaacaactttctaagtggtaatattcctaaatt |
288 |
Q |
| |
|
||||||| | |||||||||||||||| |||||| | |||| ||| |||| | |||||| ||||||||||||| |||| |||| |||||||||||||| |
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| T |
5173366 |
atttctcaggtgagttacctaaacaactggccacatattgcgataatttacaatacttgattctctccaacaactctctacgtgggaatattcctaaatt |
5173465 |
T |
|
| Q |
289 |
t |
289 |
Q |
| |
|
| |
|
|
| T |
5173466 |
t |
5173466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 5182698 - 5182780
Alignment:
| Q |
186 |
atcatttctcggatgagttacctaaacaattggccaaagattgtaatagtttaaacaccttgatcctctccaacaactttcta |
268 |
Q |
| |
|
|||||||||| | |||||||||||||||| |||||| || |||| ||| |||| | ||||| |||||||||||||||||| |
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|
| T |
5182698 |
atcatttctcaggtgagttacctaaacaactggccacaggttgtgataatttacaatacttgaagctctccaacaactttcta |
5182780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 5196098 - 5196180
Alignment:
| Q |
186 |
atcatttctcggatgagttacctaaacaattggccaaagattgtaatagtttaaacaccttgatcctctccaacaactttcta |
268 |
Q |
| |
|
|||||||||| | |||||||||||||||| |||||| || |||| ||| |||| | ||||| |||||||||||||||||| |
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|
| T |
5196098 |
atcatttctcaggtgagttacctaaacaactggccacaggttgtgataatttacaatacttgaagctctccaacaactttcta |
5196180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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