View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1017-INSERTION-11 (Length: 509)
Name: NF1017-INSERTION-11
Description: NF1017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1017-INSERTION-11 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 24 - 222
Target Start/End: Original strand, 33816550 - 33816752
Alignment:
| Q |
24 |
gtgtatcatgattattaaactttggttaacaggtatcaaagtcagcacaagtttgaacagaccaggctctaatgctggggttggaaggttcctatgcgtg |
123 |
Q |
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| T |
33816550 |
gtgtatcatgattattaaactttggtttacaggtatcaaagtcagcacaagtttgaactgaccatgctctaatgctggagttggaaggtccctatgcgtg |
33816649 |
T |
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| Q |
124 |
tgctcctctctttttaactattattaccaatgtcgtaatttcatatatatgcggtcaaaataataaatatgtagctat----gtgtgatagtttttaaga |
219 |
Q |
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| T |
33816650 |
tgctcctctctttttaactattattaccaatgtcgtaatttcatatatatgcggtcaaaataataaatatgtagctatgtacgtgtgatagtttttaaga |
33816749 |
T |
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| Q |
220 |
agt |
222 |
Q |
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| T |
33816750 |
agt |
33816752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 412 - 507
Target Start/End: Original strand, 33816945 - 33817041
Alignment:
| Q |
412 |
aaaatgatgcattgataaggtataagcaacccatcatttttagaaaaatagttggttcggtcaacaacaaagaatgcgatg-tttactaagaataat |
507 |
Q |
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| T |
33816945 |
aaaatgatgcattgataaggtataagcaacccatcatttttagaaaaatagttggttcggtcaacaacaaagaatgcgatgttttactaagaataat |
33817041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 33816818 - 33816879
Alignment:
| Q |
288 |
ttgttcttatatcttgttcctagtacaaaaacatgtacttttgaaactcaagttgttcaatc |
349 |
Q |
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| T |
33816818 |
ttgttcttatatcttgttcctagtacaaaaacatgcacttttgaaagtcaagttgttcaatc |
33816879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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