View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1017-INSERTION-13 (Length: 366)
Name: NF1017-INSERTION-13
Description: NF1017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1017-INSERTION-13 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 4163425 - 4163072
Alignment:
| Q |
8 |
ttcgccgtcaaagctatgtttggaattctctcattgacatcaaatggaacacttaagttggttgagtttttgaataataaggaatttctatcacttacgg |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4163425 |
ttcgccgtcaaagctatgtttggaattctctcattgacaccaaatggaacacttaagttggttgagtttttgaataataaggaatttctatcacttacgg |
4163326 |
T |
|
| Q |
108 |
ttagtcaaaacgagtgtgatttttatggaaaatgtgggccatttggaaattgtgatatttctagtgtaccaaatatttgtagttgttttaaagggtttga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4163325 |
ttagtcaaaacgagtgtgatttttatggaaaatgtgggccatttggaaattgtgatatttctagtgtaccaaatatttgtagttgttttaaagggtttga |
4163226 |
T |
|
| Q |
208 |
gccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggaaagaaggaatgaacttgaagtgtgaggtggtgaagaatggatca |
307 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4163225 |
gccaaagaatttggtggagtggagttcaaggaattggactaatggttgtgtgaggaaagaaggaatgaacttgaagtgtgagatggtgaagaatggatca |
4163126 |
T |
|
| Q |
308 |
cgcgtagttaaacaagataaatttttggtgcatcacaatacgaaacctcctgat |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4163125 |
agcgtagttaaacaagataaatttttggtgcatcccaatacgaaacctcctgat |
4163072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 4134267 - 4133976
Alignment:
| Q |
8 |
ttcgccgtcaaagctatgtttggaattctctcattgacatcaaatggaacacttaagttggttgagtttttgaataataaggaatttctatcacttacgg |
107 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||| || |||| |||||||||||| |||||| | |||||| |||||| | | |||| || |
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| T |
4134267 |
ttcgccgacaaaactatgtttggaattctctcattgacaccacatgggacacttaagttgattgagtataagaataaaaaggaacattttagacttgagg |
4134168 |
T |
|
| Q |
108 |
ttagtcaaaacgagtgtgatttttatggaaaatgtgggccatttggaaattgtgatatttctagtgtaccaaatatttgtagttgttttaaagggtttga |
207 |
Q |
| |
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| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4134167 |
tggatcaaaatgagtgtgatttttatggaaaatgtgggccatttggaaattgtgataattctagtgtaccaaatatttgtagttgttttaaagggtttga |
4134068 |
T |
|
| Q |
208 |
gccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggaaagaaggaatgaacttgaagtgtgaggtggtgaaga |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || |||||| |
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| T |
4134067 |
gccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggacagcaggaatgaacttgaagtgtgagatgttgaaga |
4133976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 4145069 - 4144719
Alignment:
| Q |
8 |
ttcgccgtcaaagctatgtttggaattctctcattgacatcaaatggaacacttaagttggttgagtttttgaataataaggaatttctatcacttacgg |
107 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||| || |||| |||||||||||| |||||| | |||||| |||||| || | |||| || |
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| T |
4145069 |
ttcgccgacaaaactatgtttggaattctctcattgacaccacatgggacacttaagttgattgagtataagaataaaaaggaactttttagacttgagg |
4144970 |
T |
|
| Q |
108 |
ttagtcaaaacgagtgtgatttttatggaaaatgtgggccatttggaaattgtgatatttctagtgtaccaaatatttgtagttgttttaaagggtttga |
207 |
Q |
| |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | |||||| | |
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| T |
4144969 |
ttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggaaattgtgataattctagtgtaccaa---tttgtagttgttttgatgggtttca |
4144873 |
T |
|
| Q |
208 |
gccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggaaagaaggaatgaacttgaagtgtgaggtggtgaagaatggatca |
307 |
Q |
| |
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||||||||||| |||||| ||||||| | | ||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
4144872 |
gccaaagaattcggtggagtggagtttaggaaattggactaatggttgtgtgagaacagaaggattgaacttgaagtgtgagatggtgaagaatggatca |
4144773 |
T |
|
| Q |
308 |
cgcgtagttaaacaagataaatttttggtgcatcacaatacgaaacctcctgat |
361 |
Q |
| |
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|||| ||||||||| ||||||||||||||| |||| ||||||||||||| |
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|
| T |
4144772 |
aatctagtgaaacaagatgcatttttggtgcatcataatatgaaacctcctgat |
4144719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 361
Target Start/End: Complemental strand, 4153059 - 4152722
Alignment:
| Q |
21 |
ctatgtttggaattctctcattgacatcaaatggaacacttaagttggttgagtttttgaataataaggaatttctatcacttacggttagtcaaaacga |
120 |
Q |
| |
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||||||| |||||||||||||||||| | |||||||||| |||||| |||||| | ||||||| |||||| || | |||| |||| |||||| || |
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| T |
4153059 |
ctatgttcggaattctctcattgacaccgcatggaacactcaagttgattgagtatatgaataaaaaggaactttttagacttgaggttgatcaaaatga |
4152960 |
T |
|
| Q |
121 |
gtgtgatttttatggaaaatgtgggccatttggaaattgtgatatttctagtgtaccaaatatttgtagttgttttaaagggtttgagccaaagaatttg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||| ||||| ||| |||| |||||||||||||| | ||||||||||||||||||| |
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|
| T |
4152959 |
gtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctactgtgccaa---tttgtagttgttttgatgggtttgagccaaagaattct |
4152863 |
T |
|
| Q |
221 |
gtggaatggagttcaaggaattggactaatggttgtgtgaggaaagaaggaatgaacttgaagtgtgaggtggtgaagaatggatcacgcgtagttaaac |
320 |
Q |
| |
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||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | ||||||||| |
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| T |
4152862 |
gtggaatggagtttaggcaattggactaatggttgtgtgaggaaagaaggaatgaacttaaagtgtgagatggtgaagaatggatcaagtatagttaaac |
4152763 |
T |
|
| Q |
321 |
aagataaatttttggtgcatcacaatacgaaacctcctgat |
361 |
Q |
| |
|
||||| |||| |||| |||| |||| ||||||||||||| |
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| T |
4152762 |
aagatggatttaaggtgtatcataatatgaaacctcctgat |
4152722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 8 - 325
Target Start/End: Complemental strand, 4123722 - 4123408
Alignment:
| Q |
8 |
ttcgccgtcaaagctatgtttggaattctctcattgacatcaaatggaacacttaagttggttgagtttttgaataataaggaatttctatcacttacgg |
107 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||||||||| || |||||||||||||||||||||||| | ||||||| |||||| |||| | || || |
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|
| T |
4123722 |
ttcgccgacaaaactatgtttggaattctgtcattgacaccacatggaacacttaagttggttgagtatatgaataaaaaggaacttcttagatttgagg |
4123623 |
T |
|
| Q |
108 |
ttagtcaaaacgagtgtgatttttatggaaaatgtgggccatttggaaattgtgatatttctagtgtaccaaatatttgtagttgttttaaagggtttga |
207 |
Q |
| |
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|| |||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||| ||| |||| |||||||||||||| | |||||||| |
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| T |
4123622 |
ttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgccaa---tttgtagttgttttgatgggtttga |
4123526 |
T |
|
| Q |
208 |
gccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggaaagaaggaatgaacttgaagtgtgaggtggtgaagaatggatca |
307 |
Q |
| |
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| ||||||||| ||||||||||||| | | ||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |
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| T |
4123525 |
ggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaacttgaagtgtgagatggtgaagaatggatca |
4123426 |
T |
|
| Q |
308 |
cgcgtagttaaacaagat |
325 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
4123425 |
actgtagttaagcaagat |
4123408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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