View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1017-INSERTION-15 (Length: 472)
Name: NF1017-INSERTION-15
Description: NF1017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1017-INSERTION-15 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 23599120 - 23599576
Alignment:
| Q |
8 |
atagagtgagaagaagaatgtgttatatttataagactttgtatgcatacttggagttaacagaacatagcatcacgtacactttgttcatcagcatcac |
107 |
Q |
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||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23599120 |
atagagtgagaagaagaatgtattata------agacattgtatgcatacttggagttaacagaacatagcatcacgtacactttgttcatcagcatcac |
23599213 |
T |
|
| Q |
108 |
ttttgcactttgtttagttctatcagcaaagttaccaatgttatacactgccagttcggcattgtgcgtgtgtttgtttcttgtactttgtttgagttat |
207 |
Q |
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||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23599214 |
tttcgcactttgtttagttttatcagcaaagttacaaatgttatacactgccagttcggcattgtgcgtgtgtttgtttcttgtactttgtttgagttat |
23599313 |
T |
|
| Q |
208 |
atattagctcgttctgtgagtatattgtactttcttcgagttata--catcagcttaatcatgtgtataatgcattattgtttttgtttgtttaccggtg |
305 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23599314 |
atattagctcgttctctgagtatattgtactttcttcgagttatatacatcagcttaatcatgtgtataatgcattattgtttttgtttgtttaccggtg |
23599413 |
T |
|
| Q |
306 |
tttaattttgccgtgtggaattatagattggtgccttgtttggcacgtatttatagtagagttaatatctcaaataacctctctttataatgtgtgcgaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23599414 |
tttaattttgccgtgtggaattatagattggtgccttgcttggcacgtatttattgtagagttaatatctcaaataacctctctttataatgtgtgcgaa |
23599513 |
T |
|
| Q |
406 |
gttgaaaaatagtctatgtaaaactaaaaacacatattttccttgtgtgattttatattcttc |
468 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23599514 |
gttgaaaaatagtctatgtaaaactaaaaacacagattttccttgtgtgattttatattcttc |
23599576 |
T |
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