View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1017-INSERTION-3 (Length: 732)
Name: NF1017-INSERTION-3
Description: NF1017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1017-INSERTION-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 162 - 731
Target Start/End: Complemental strand, 27864713 - 27864152
Alignment:
| Q |
162 |
cggtatttatatccaacgaaccaaccaaaccaaacacaacacaattcaacaggttaaggttttggtc-gtgttaggttacctctgtgacatttgtgcaaa |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27864713 |
cggtatttatatccaacgaaccaaccaaaccaaacacaacacaattcaacaggttaaggttttggtctgtgttaggttacctctgtgacatttgtgcaaa |
27864614 |
T |
|
| Q |
261 |
cagttagttgcgcctctcacacaatcaaaaatcgttagttaggtatgtttcttctactttctatcatgatttgtctcagatttattttatctaacctcag |
360 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27864613 |
cagttagtcgcgcctctcacacaataaaaaatcgttagttaggtatgtttcttctactttctaccatgatttgtctcagatttattttatctaatctcag |
27864514 |
T |
|
| Q |
361 |
atttaagatccaaatcaacttgtttaatttaatttaatttaatagcatgcatagatattatcaccatacataatcacatgtgaaatttattgttgattta |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27864513 |
atttaagatccaaatcaacttgtttaatttaat----------agcatgcatagatatcatcaccatacataatcacatgtgaaatttgttgttgattta |
27864424 |
T |
|
| Q |
461 |
tggttttgtgattgaatcagaatctgatataaagaaagatgggcagcactgatttttcatggaaattaccggatcatcctaagctaccaaagggaaagac |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27864423 |
tggttttgtgattgaatcagaatctgatataaagaaagatgggaagcactgatttttcatggaaattaccggatcatcctaagctaccaaagggaaagac |
27864324 |
T |
|
| Q |
561 |
agttgctgttattgttttggatggttggggtgaagctaatgctaatgaatacaattgtattcacaacgctgaaacacctaccatggattcccttaagcag |
660 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27864323 |
agttgctgttattgttttggatggttggggtgaagctaatgctaatgaatacaattgtattcacaacgctgaaacacctaccatggattcccttaaacag |
27864224 |
T |
|
| Q |
661 |
gtataatcatctttttc-gattgaatatagttagatctattgctgttttgggtttttgtttaaagttatatt |
731 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
27864223 |
gtataatcatctctttcggattgaatatagttagatctattgctgctctgggtttttgtttaaagttatatt |
27864152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 27864865 - 27864783
Alignment:
| Q |
7 |
aaaattacgtgactcgtatttcccnnnnnnnctccgtctcgtgactcacgat-ctagtagcttcattcctattataaattttc |
88 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
27864865 |
aaaattacgtgactcgcatttccctttttttctccgtctcgtgactcacgattctagtagcttcattccttttataaattttc |
27864783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University