View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1017-INSERTION-4 (Length: 720)

Name: NF1017-INSERTION-4
Description: NF1017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1017-INSERTION-4
NF1017-INSERTION-4
[»] chr5 (4 HSPs)
chr5 (8-703)||(40179749-40180443)
chr5 (250-423)||(38604498-38604671)
chr5 (45-181)||(38604296-38604432)
chr5 (600-693)||(38604842-38604935)
[»] chr8 (6 HSPs)
chr8 (253-423)||(44460734-44460898)
chr8 (253-423)||(44468267-44468431)
chr8 (253-423)||(34501786-34501950)
chr8 (8-181)||(44460967-44461143)
chr8 (8-181)||(44468500-44468676)
chr8 (600-679)||(34502112-34502191)
[»] chr6 (2 HSPs)
chr6 (8-82)||(9160411-9160485)
chr6 (12-65)||(9161493-9161546)
[»] chr1 (2 HSPs)
chr1 (253-311)||(46359639-46359697)
chr1 (8-181)||(46359766-46359948)


Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 8 - 703
Target Start/End: Original strand, 40179749 - 40180443
Alignment:
Q  8 ggatcaacttgtgatattcatccagattgatggataaaccataatccttcatctcagtcaataaattgagagccttatcataattctgt---agcttaca 104  Q
    ||||||| ||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||   |  | |||    
T  40179749 ggatcaatttgtgatattcatccagattgattg-taaaccaaaatccttcatctcagtcaataacttgagagccttatcataattctgtttaaaatcaca 40179847  T
Q  105 atttataaaaatgagcatatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatctccttagcttgtttcataccaata 204  Q
    || || ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  | ||    
T  40179848 atctacaa---tgagcatatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatctccttagcttgtgtcatataacta 40179944  T
Q  205 taataattgccattgccacacataagagcatcataagtgcgtaagcctatactttccaatagcatcaccatctccaaagcttgtccgatttccccagcat 304  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40179945 taataactgccattgccacacgtaagagcatcataagtgtgtaagcctatactttccaatagcatcaccatctccaaagcttgtccgatttccctagcat 40180044  T
Q  305 caacataagccttaataatcacattgaaaacgtattttgaaggacgcggtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaa 404  Q
    ||||||| | ||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40180045 caacataggtcttaataatcacattgaaaacttcttttgaaggacgctgtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaa 40180144  T
Q  405 atctttaaaccgacacaagcctgtaataacctgccgacagtgcaatagtttagtcccctcttcctggtgctccacctcctgagggaaatcaataacagtc 504  Q
    |||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||    
T  40180145 atctttaaactgacacaaggctgtaataaccttccgacagtgcgatagtttagtcccctcttccttgtgctccacctccttatggatatcaataacagtc 40180244  T
Q  505 aacaaatccaaagccaaatatacagtttcttttcttgaacaaagtgtgccaaactcaaatattctatggggtaacatcctatctaacgctagcccccagt 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  40180245 aacaaatccaaagccaaatatacagtttcttttcttgaacaaagtgtgtcaaactcaaatattctatggggtaacagcctatctaactctagcccccagt 40180344  T
Q  605 ttgggtttcttttccatttctcttttgctgcccaatagagagcaggggcttctttaatcatattatttttagaaaaccaagttaacaagctaccaagta 703  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40180345 ttgggtttcttttccgtttctcatttgctgcccgatagagagcataggcttctttaatcatattatttttagaaaaccaagttaacaagcgaccaagta 40180443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 250 - 423
Target Start/End: Original strand, 38604498 - 38604671
Alignment:
Q  250 cctatactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacataagccttaataatcacattgaaaacgtattttgaaggac 349  Q
    ||||||||||||||||||| |||||||||||||||  ||||| |||||| ||| | |||| | ||  ||||||| | || ||||||  ||| |||||||     
T  38604498 cctatactttccaatagcaacaccatctccaaagcccgtccggtttccctagctttaacacaggcactaataattatatcgaaaacagattgtgaaggat 38604597  T
Q  350 gcggtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag 423  Q
      ||||||||||| ||| | ||||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  38604598 atggtagcggaccatcttctatcattttaaagatcaattgcttggctgcatcgaaatcttcaaaccgacacaag 38604671  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 38604296 - 38604432
Alignment:
Q  45 accataatccttcatctcagtcaataaattgagagccttatcataattctgtagcttacaatttataaaaatgagcatatggtagagcaaagcaacgatt 144  Q
    |||| ||| |||||||| ||||||||| ||||||||||||||| |||| |||||||| |||| |  || ||||||   |||||| |||| ||||| ||||    
T  38604296 accaaaattcttcatctgagtcaataacttgagagccttatcaaaattatgtagcttgcaatatccaacaatgagtgaatggtacagcagagcaatgatt 38604395  T
Q  145 aacttagagtccttctttttggcttcttccaagatct 181  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  38604396 aacttagaatccttctttctggcttcttccaagatct 38604432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 600 - 693
Target Start/End: Original strand, 38604842 - 38604935
Alignment:
Q  600 ccagtttgggtttcttttccatttctcttttgctgcccaatagagagcaggggcttctttaatcatattatttttagaaaaccaagttaacaag 693  Q
    ||||||||| ||| |||||| |||||| ||||| |||  ||||| ||||   ||||||||||||||||||||||||||| |||||  |||||||    
T  38604842 ccagtttggatttgttttccgtttctcctttgcagccagatagatagcatatgcttctttaatcatattatttttagaagaccaaactaacaag 38604935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 253 - 423
Target Start/End: Complemental strand, 44460898 - 44460734
Alignment:
Q  253 atactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacataagccttaataatcacattgaaaacgtattttgaaggacgcg 352  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||| ||  ||||||| | | ||| | | ||| ||||||||        
T  44460898 atactttccaatagcatcaccatctccaaaacctgtccgatttccccagctttaacataggcagtaataattatactgatatcatatattgaagga---t 44460802  T
Q  353 gtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag 423  Q
    |||   ||| ||||||||||||||||| |||||||||||||||||  || ||||||||||||| |||||||    
T  44460801 gta---gactgtctgcaatcattttaaggatcaactgcttggctgtttcgaaatctttaaacccacacaag 44460734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 253 - 423
Target Start/End: Complemental strand, 44468431 - 44468267
Alignment:
Q  253 atactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacataagccttaataatcacattgaaaacgtattttgaaggacgcg 352  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||| ||  ||||||| | | ||| | | ||| ||||||||        
T  44468431 atactttccaatagcatcaccatctccaaaacctgtccgatttccccagctttaacataggcagtaataattatactgatatcatatattgaagga---t 44468335  T
Q  353 gtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag 423  Q
    |||   ||| ||||||||||||||||| |||||||||||||||||  || ||||||||||||| |||||||    
T  44468334 gta---gactgtctgcaatcattttaaggatcaactgcttggctgtttcgaaatctttaaacccacacaag 44468267  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 253 - 423
Target Start/End: Original strand, 34501786 - 34501950
Alignment:
Q  253 atactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacataagccttaataatcacattgaaaacgtattttgaaggacgcg 352  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||| ||  ||||||| | | ||| | | ||| ||||||||        
T  34501786 atactttccaatagcatcaccatctccaaaacctgtccgatttccccagctttaacataggcagtaataattatactgatatcatatattgaagga---t 34501882  T
Q  353 gtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag 423  Q
    |||   ||| ||||||||||||||||| |||||||| ||||||||| || |||| |||||||| |||||||    
T  34501883 gta---gactgtctgcaatcattttaaggatcaacttcttggctgcttctaaatttttaaacccacacaag 34501950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 44461143 - 44460967
Alignment:
Q  8 ggatcaacttgtgatattcatccagattgatg---gataaaccataatccttcatctcagtcaataaattgagagccttatcataattctgtagcttaca 104  Q
    |||||||||||||||||||||| |||||| ||   || | |||| |||||||||||| ||||||||| | ||||||   |||| | |||| |||||| ||    
T  44461143 ggatcaacttgtgatattcatcaagattggtgtgggagacaccaaaatccttcatctgagtcaataactcgagagcaccatcaaatttctctagcttgca 44461044  T
Q  105 atttataaaaatgagcatatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatct 181  Q
    || |  || ||||||  ||||||| ||||||| || |||||||||| | |||| ||||||||||| |||||||||||    
T  44461043 atatccaacaatgagtgtatggtacagcaaagtaatgattaacttacaatcctgctttttggctttttccaagatct 44460967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 44468676 - 44468500
Alignment:
Q  8 ggatcaacttgtgatattcatccagattgatg---gataaaccataatccttcatctcagtcaataaattgagagccttatcataattctgtagcttaca 104  Q
    |||||||||||||||||||||| |||||| ||   || | |||| |||||||||||| ||||||||| | ||||||   |||| | |||| |||||| ||    
T  44468676 ggatcaacttgtgatattcatcaagattggtgtgggagacaccaaaatccttcatctgagtcaataactcgagagcaccatcaaatttctctagcttgca 44468577  T
Q  105 atttataaaaatgagcatatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatct 181  Q
    || |  || ||||||  ||||||| ||||||| || |||||||||| | |||| ||||||||||| |||||||||||    
T  44468576 atatccaacaatgagtgtatggtacagcaaagtaatgattaacttacaatcctgctttttggctttttccaagatct 44468500  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 600 - 679
Target Start/End: Original strand, 34502112 - 34502191
Alignment:
Q  600 ccagtttgggtttcttttccatttctcttttgctgcccaatagagagcaggggcttctttaatcatattatttttagaaa 679  Q
    ||||||||||||| |||| | |||||| ||||| |||  ||||||||||  |||||||||||||||||| |||| |||||    
T  34502112 ccagtttgggtttgttttgcgtttctcatttgcagccatatagagagcataggcttctttaatcatatttttttgagaaa 34502191  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 9160485 - 9160411
Alignment:
Q  8 ggatcaacttgtgatattcatccagattgatggataaaccataatccttcatctcagtcaataaattgagagcct 82  Q
    |||||||||||||||||||||  ||||| ||||| |||||| |||||||||||||||||||||| |||| |||||    
T  9160485 ggatcaacttgtgatattcataaagattcatggagaaaccaaaatccttcatctcagtcaataacttgacagcct 9160411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 9161546 - 9161493
Alignment:
Q  12 caacttgtgatattcatccagattgatggataaaccataatccttcatctcagt 65  Q
    |||||||||||||||||| ||||||||||| |||| | |||||||| |||||||    
T  9161546 caacttgtgatattcatcaagattgatggagaaacaaaaatccttcgtctcagt 9161493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 46359697 - 46359639
Alignment:
Q  253 atactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacata 311  Q
    |||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||    
T  46359697 atactttccaatagcatcaccatctccaaaacctgtccgacttccccagcattaacata 46359639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 46359948 - 46359766
Alignment:
Q  8 ggatcaacttgtgatattcatccagattgatg---gataaaccataatccttcatctcagtcaataaatt------gagagccttatcataattctgtag 98  Q
    |||||||||||||||||||||| |||||| ||   || | |||| |||||||||||| |||||||| ||       ||||||   |||| | |||| |||    
T  46359948 ggatcaacttgtgatattcatcaagattggtgtgggagacaccaaaatccttcatctgagtcaatatatataactcgagagcaccatcaaatttctctag 46359849  T
Q  99 cttacaatttataaaaatgagcatatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatct 181  Q
    ||| |||| |  || ||||||  ||||||| ||||||| || |||||||||| | |||| |||||||||||||||||||||||    
T  46359848 cttgcaatatccaacaatgagtgtatggtacagcaaagtaatgattaacttacaatcctgctttttggcttcttccaagatct 46359766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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