View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1017-INSERTION-6 (Length: 711)
Name: NF1017-INSERTION-6
Description: NF1017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1017-INSERTION-6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 673; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 8 - 711
Target Start/End: Original strand, 40008711 - 40009408
Alignment:
| Q |
8 |
aaaacaacaaatcattcattgttcagttaatgaaagtgacttacccgagcaggtcctttgttattatgaaggtaagtagggccatctttatattcaccat |
107 |
Q |
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| T |
40008711 |
aaaacaacaaatcattcattgttcagttaatgaaagtgacttacccgagcaggtcctttgttattatgaaggtaagtagggccatctttatattcaccat |
40008810 |
T |
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| Q |
108 |
accaataataagtacttgaattttcatcatatagaatgcaccctccatgagcttgaataggatttccatcagtatccaaccaaattttcccagggtagta |
207 |
Q |
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| T |
40008811 |
accaataataagtacttgaattttcatcatatagaatgcaccctccatgagcttgaataggatttccatcagtatccaaccaaattttcccagggtagta |
40008910 |
T |
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| Q |
208 |
gtaattataactatcattctttcctttccctatagtcttcattggatcaataacacttgttttatgaggaaagaaaacatgtctaagtgatgaatcttga |
307 |
Q |
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| T |
40008911 |
gtaattataactatcattctttcctttccctatagtcttcattggatcaat------tgttttatgaggaaagaaaacatgtctaagtgatgaatcttga |
40009004 |
T |
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| Q |
308 |
tccaagaattcatcaaccaatggtgttattgatttgctttgaggtgacctctttttgtttggtggggggatttggaagttctccttttcaacttgttgga |
407 |
Q |
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| T |
40009005 |
tccaagaattcatcaaccaatggtgttattgatttgctttgaggtgacctctttttgtttggtggggggatttggaagttctccttttcaacatgttgga |
40009104 |
T |
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| Q |
408 |
gttgatggaaatgagaaggaagaggaggaggatgaatgatattcaaggaggtgttattattggaatatagatgaagcaaaagtatccatcctaagattaa |
507 |
Q |
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| T |
40009105 |
gttgatggaaatgagaaggaagaggaggaggatgaatgatattcaaggaggtgttattattggaatatagatgaagcaaaagtatgcatcctaagattaa |
40009204 |
T |
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| Q |
508 |
caaggtccataatattacaagtgatatagaacaatatctactccaactactgcaacgtaaattagtaattggtttcttgtatagattcttcatcctcatt |
607 |
Q |
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| T |
40009205 |
caaggtccataatattacaagtgatatagaacaatatctactccaactactgcaacgtaaattagtaattggtttcttgtatagattcttcatcctcatt |
40009304 |
T |
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| Q |
608 |
tttctcaagctctactctatatgttcaaaataatgatgaaaattgtaagtaatgaatgtaagcaaagctatatgtgtagcgtatacttgattgaaaaatg |
707 |
Q |
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| T |
40009305 |
tttctcaagctctactctatatgttcaaaataatgatgaaaattgtaagtaatgaatgtaagcaaagctatatgtgtagcgtatacttgattgaaaaatg |
40009404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 39994965 - 39995025
Alignment:
| Q |
467 |
ttggaatatagatgaagcaaaagtatccatcctaagattaacaaggtccataatattacaag |
528 |
Q |
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| T |
39994965 |
ttggaatatagatgaagcaaaa-tatgcatcctaagattaacaaggttcataatattacaag |
39995025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 5350326 - 5350211
Alignment:
| Q |
92 |
tctttatattcaccataccaataataagtacttgaattttcatcatatagaatgcaccctccatgagcttgaataggatttccatcagtatccaaccaaa |
191 |
Q |
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| T |
5350326 |
tctttatattcaccataccaatagtatgtcctagaacttttatcatacagaatgccccctccatgggcttgaataggatgaccatcagtatccaaccaca |
5350227 |
T |
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| Q |
192 |
ttttcccagggtagta |
207 |
Q |
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| T |
5350226 |
ttctccccgggtagta |
5350211 |
T |
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