View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1017-INSERTION-8 (Length: 722)

Name: NF1017-INSERTION-8
Description: NF1017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1017-INSERTION-8
NF1017-INSERTION-8
[»] chr8 (5 HSPs)
chr8 (8-271)||(10867686-10867947)
chr8 (415-600)||(10868168-10868355)
chr8 (600-715)||(10868301-10868417)
chr8 (284-410)||(10868012-10868138)
chr8 (510-559)||(4281285-4281334)
[»] chr1 (2 HSPs)
chr1 (640-712)||(35314606-35314678)
chr1 (328-367)||(37525594-37525633)
[»] chr7 (1 HSPs)
chr7 (319-367)||(6442221-6442269)
[»] chr6 (1 HSPs)
chr6 (211-269)||(22730597-22730655)
[»] chr4 (1 HSPs)
chr4 (509-559)||(49026057-49026107)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 10867686 - 10867947
Alignment:
Q  8 gtcgcatgaatgcggcaaacttttgtcacaaataatctgatttcatgaacagcatatgctcctgtagggatcaccgtgttatacatattctagatattat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||    
T  10867686 gtcgcatgaatgcggcaaacttttgtcacaaataatctgatttcatgaacagcatatgctcctgtagggttcaccgtgtta--catattctagatattat 10867783  T
Q  108 catcataatagaaccgagaaaagcaatgatggacaagtgttagaaaagcaatccgtaactgaataataattgaaaacgaaaataaaagaccatagatacc 207  Q
    ||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10867784 catcataatagaaccgagaaaagcaatgggggataagtgttagaaaagctatccgtaactgaataataattgaaaacgaaaataaaagaccatagatacc 10867883  T
Q  208 atctttgttaatgtagtttgttcaatgatgtctgcctctacgactatagaacaactataattct 271  Q
    |||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10867884 atctctgtgaacgtagtttgttcaatgatgtctgcctctacgactatagaacaattataattct 10867947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 415 - 600
Target Start/End: Original strand, 10868168 - 10868355
Alignment:
Q  415 caatatatataacactattagggcacataatgtactaacaatataaattttatacgaatacttgtgtcattttaaaaaatgaatactacata-ttaaatt 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10868168 caatatatataacactattagggcacataatgtactaacaatataaattttatacgaatacttgtgtcattttaaaaaatgaatactacatatttaaatt 10868267  T
Q  514 aattcttctcaataattacttgctatttatggaattcttaacatgtaactttaaaggaaatcgctacttata-ggaaaagtaacatca 600  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||| |||| |||||||||||||||    
T  10868268 aattcttctcaataattatttgctatttatggaatacttaacatgtaactttaaagggaattgctacatatagggaaaagtaacatca 10868355  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 600 - 715
Target Start/End: Original strand, 10868301 - 10868417
Alignment:
Q  600 atacttaacatgtaactttaaaggaaatcgctacttatagg-aaaagtaacgtcacgaagcattcacgggtgtgtatttaagttgatatttgcagtaaat 698  Q
    |||||||||||||||||||||||| ||| ||||| |||||| ||||||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||    
T  10868301 atacttaacatgtaactttaaagggaattgctacatatagggaaaagtaacatcacgaagcattcaggggtgtgtttttaagttgatatttgcaggaaat 10868400  T
Q  699 tacatccatatcatgat 715  Q
    ||||||||| |||||||    
T  10868401 tacatccatgtcatgat 10868417  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 410
Target Start/End: Original strand, 10868012 - 10868138
Alignment:
Q  284 ttttcaatactctctatcacttannnnnnngttggatgaactcaatgtatgttccaccattttatctggattcaattttcaaagaatgatttaaatcaat 383  Q
    ||||||| |||||||||||||||        |||||||||||||||||||||| ||||||||| | |||||||||||||||||  |||||||||||| ||    
T  10868012 ttttcaacactctctatcacttatttttttattggatgaactcaatgtatgtttcaccattttgtgtggattcaattttcaaaatatgatttaaatcgat 10868111  T
Q  384 nnnnnnntgaatatttgagagattgtt 410  Q
           ||||||||| ||||||||||    
T  10868112 aaaaaagtgaatatttaagagattgtt 10868138  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 559
Target Start/End: Complemental strand, 4281334 - 4281285
Alignment:
Q  510 aattaattcttctcaataattacttgctatttatggaattcttaacatgt 559  Q
    ||||||||| |||||||||||||||||||||| | |||| ||||||||||    
T  4281334 aattaattcctctcaataattacttgctatttttagaatccttaacatgt 4281285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 640 - 712
Target Start/End: Original strand, 35314606 - 35314678
Alignment:
Q  640 gaaaagtaacgtcacgaagcattcacgggtgtgtatttaagttgatatttgcagtaaattacatccatatcat 712  Q
    |||||| ||| ||||||| | || ||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  35314606 gaaaagcaacatcacgaaacttttacgagcgtgtatttaagttgatatttgcagtaaattacatccatgtcat 35314678  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 367
Target Start/End: Original strand, 37525594 - 37525633
Alignment:
Q  328 atgtatgttccaccattttatctggattcaattttcaaag 367  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  37525594 atgtatgttccaccattttatgtgggttcaattttcaaag 37525633  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 6442221 - 6442269
Alignment:
Q  319 atgaactcaatgtatgttccaccattttatctggattcaattttcaaag 367  Q
    ||||| |||||||||||||||||||||| |  |||||||||||||||||    
T  6442221 atgaaatcaatgtatgttccaccattttgtggggattcaattttcaaag 6442269  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 22730597 - 22730655
Alignment:
Q  211 tttgttaatgtagtttgttcaatgatgtctgcctctacgactatagaacaactataatt 269  Q
    |||||||| |||||||| |||||  ||||| | |||||||||||| |||||||||||||    
T  22730597 tttgttaacgtagtttgatcaatattgtctacttctacgactatataacaactataatt 22730655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 49026057 - 49026107
Alignment:
Q  509 aaattaattcttctcaataattacttgctatttatggaattcttaacatgt 559  Q
    |||||| || |||||||||| |||||||||||| |||||| ||||||||||    
T  49026057 aaattattttttctcaataaatacttgctatttgtggaatccttaacatgt 49026107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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