View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1017-INSERTION-9 (Length: 680)

Name: NF1017-INSERTION-9
Description: NF1017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1017-INSERTION-9
NF1017-INSERTION-9
[»] chr6 (1 HSPs)
chr6 (8-680)||(217935-218607)


Alignment Details
Target: chr6 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 8 - 680
Target Start/End: Original strand, 217935 - 218607
Alignment:
Q  8 acatgttcctcctcattccctataattcaacatgtgaacccaaataattactatttcgtctcttttctttttacctcaatttatttttaattcatataat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  217935 acatgttcctcctcattccctataattcaacatgtgaacccaaataattactatttcgtctcttttctttttacctcaatttatttttaattcatataat 218034  T
Q  108 ttctaagataatttggatttgctataagaaaattagagttgccaacttagagcctaatttaattctctgagaatatcaaatttttcaaaaaattaaatta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  218035 ttctaagataatttggatttgctataagaaaattagagttgccaacttagagcctaatttaattctctgagaatatcaaattttttaaaaaattaaatta 218134  T
Q  208 ccttttaaattggtgactccaaatgattttcttattggagatctatagtcattttactaattctctcaataacaacatgatattgtaggcatatacaatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  218135 ccttttaaattggtgactccaaatgattttcttattggagatctatagtcattttactaattctctcaataacaacatgatattgtaggcatatacaatt 218234  T
Q  308 tgtattctttagcaagaagagattcaaaacttttatctaatcaaaatctaaaatataaaaacttgtcggatttcatcatagcatacgtcatttaaaatta 407  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  218235 tgtattctttagcaagaagagattctaaacttttatctaatcaaaatctaaaatataaaaacttgtcggatttcatcatagcatacgtcatttaaaatta 218334  T
Q  408 ccatttatcatgtcatgactcaaaagatcaaattgcattcctaatttggcaatgttccacatgctagaagttagtatcataaatatataaaaataaatac 507  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  218335 ccatttatcatgtcatgactcaaaagatcaaattgtattcctaatttggcaatgttccacatgctagaagttagtatcataaatatataaaaataaatac 218434  T
Q  508 aatgattatcttcatttcacccctatatatatgcttatgtaacattcaagttttaattaactattagcctttaagtccctagctactctgcatcaccaaa 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  218435 aatgattatcttcatttcacccctatatatatgcttatgtaacattcaagttttaattaactattagcctttaagtccctagctactctgcatcaccaaa 218534  T
Q  608 tttcttcacaaaacaatgtcttccaacaatctctctgtcattcttcctcatgttctaatcgtttctagacgaa 680  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  218535 tttcttcacaaaacaatgtcatccaacaatctctctgtcattcttcctcatgttctaatcgtttctagacgaa 218607  T

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