View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10170_high_10 (Length: 207)

Name: NF10170_high_10
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10170_high_10
NF10170_high_10
[»] chr2 (1 HSPs)
chr2 (19-199)||(9567296-9567476)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 9567296 - 9567476
Alignment:
Q  19 cttatcatctctaggaagagccacatcaattgattcaaacattgcagtgtaataattcaaagtctcagcaaaccttggtaaaaatggagatgtgtttgtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9567296 cttatcatctctaggaagagccacatcaattgattcaaacattgcagtgtaataattcaaagtctcagcaaaccttggtaaaaatggagatgtgtttgtg 9567395  T
Q  119 tttgactcctgctccacaaataacacgaccttaggcgacaaaatcttcaccagtctcaaaagcctgtccctatgcttctcc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  9567396 tttgactcctgctccacaaataacacgaccttaggcgacaaaatcttcaccagtctcaaaagcctgtctctatgattctcc 9567476  T

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