View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10170_high_4 (Length: 252)
Name: NF10170_high_4
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10170_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 4570198 - 4569988
Alignment:
| Q |
14 |
cacagacaaagcaaagcaatcaggtagcattaagcaaaaataacctcacaacataacacaaaccatacaattaaatttaaaatgttgaaaattaaagaac |
113 |
Q |
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| T |
4570198 |
cacagacaaagcaaagcaatcaggtagcattaagcaaaaataacctcacaacataacacaaaccatacaattaaa------atgttgaaaatcaaagaac |
4570105 |
T |
|
| Q |
114 |
aaattctcatttttccttctcacacccccttccttgaagaccacaccctccctctctcccacctcgacaccgaccgcaacctcaatacaaccatacgcta |
213 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4570104 |
aaactctcatttttccttctcacacccccttccttgaagaccacaccctccctctctcccacctcgacatcgaccgcaacctcaatacaaccatacgcta |
4570005 |
T |
|
| Q |
214 |
cctccgcgcttacacag |
230 |
Q |
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||||||||||||||||| |
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| T |
4570004 |
cctccgcgcttacacag |
4569988 |
T |
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