View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10170_high_6 (Length: 241)
Name: NF10170_high_6
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10170_high_6 |
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| [»] scaffold0051 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 17536102 - 17536317
Alignment:
| Q |
19 |
gacattgctataggtagagctgatgcttgttgagacattacttgaagaggccatcacttttcaccttcaatcttttcttttcttaaaggatctgaagcta |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17536102 |
gacattgctataggtagagatgatgcttgttgagacattacttgaagaggccatcacttttcaccttcaatctcttcttttcttaaaggatctgaagcac |
17536201 |
T |
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| Q |
119 |
tggtaccactttgttggtgataatctagagagaaccggtctgctaagttatgcagaaaat---aaaaataggaggaataataatctagtgctgaataatg |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| |
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| T |
17536202 |
tggtaccactttgttggtgatattctagagagaaccggtctgctaagttatgcagaaaataagaagaataggaggaataataatctggtgctgaataatg |
17536301 |
T |
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| Q |
216 |
cttgtttggttctttg |
231 |
Q |
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|||||||||||||||| |
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| T |
17536302 |
cttgtttggttctttg |
17536317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 17531803 - 17531905
Alignment:
| Q |
129 |
ttgttggtgataatctagagagaaccggtctgctaagttatgcagaaaataaaaataggaggaataataatctagtgctgaataatgcttgtttggttct |
228 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
17531803 |
ttgttggtgatattctagagagaaccggtctgctaagttatgcagaaaataaggataggaggaataataatctggtgctgaataatgtttgtttggttct |
17531902 |
T |
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| Q |
229 |
ttg |
231 |
Q |
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||| |
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| T |
17531903 |
ttg |
17531905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 38546 - 38758
Alignment:
| Q |
19 |
gacattgctataggtagagctgatgcttgttgagacattacttgaagaggccatcacttttcaccttcaatcttttcttttcttaaaggatctgaagcta |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
38546 |
gacattgctataggtagagttgatgcttgttgagacattacttgaagaggccatcacttttcaccttcagtctcttcttttcttaaaggatctgaagctc |
38645 |
T |
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| Q |
119 |
tggtaccactttgttggtgataatctagagagaaccggtctgctaagttatgcagaaaataaaaataggaggaataataatctagtgctgaataatgctt |
218 |
Q |
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|||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||| |
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| T |
38646 |
tggtaccactttgttggtgatattctagaggcaattggtctgctaagttatgcagaaaataagaataggaggaataataatttggtgctgaataatgctt |
38745 |
T |
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| Q |
219 |
gtttggttctttg |
231 |
Q |
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|||||||||||| |
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| T |
38746 |
atttggttctttg |
38758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 22704 - 22806
Alignment:
| Q |
129 |
ttgttggtgataatctagagagaaccggtctgctaagttatgcagaaaataaaaataggaggaataataatctagtgctgaataatgcttgtttggttct |
228 |
Q |
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||||||| |||| ||||||| ||| ||||||||||||||||||||||| || |||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
22704 |
ttgttggcgatattctagagggaattggtctgctaagttatgcagaaaacaagaataggaggaataataatttggtgctgaataatgcttgtttggttct |
22803 |
T |
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| Q |
229 |
ttg |
231 |
Q |
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||| |
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| T |
22804 |
ttg |
22806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 552846 - 552948
Alignment:
| Q |
129 |
ttgttggtgataatctagagagaaccggtctgctaagttatgcagaaaataaaaataggaggaataataatctagtgctgaataatgcttgtttggttct |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
552846 |
ttgttggtgataatctagagagaaccggtctgctaagttatgcagaaaataaaaataggaggaataataatctagtgctgaataatgcttgtttggttct |
552945 |
T |
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| Q |
229 |
ttg |
231 |
Q |
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||| |
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| T |
552946 |
ttg |
552948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 16413635 - 16413738
Alignment:
| Q |
128 |
tttgttggtgataatctagagagaaccggtctgctaagttatgcagaaaataaaaataggaggaataataatctagtgctgaataatgcttgtttggttc |
227 |
Q |
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||||||||||||| | ||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16413635 |
tttgttggtgatattttagagggaacaggtctgctaagttatgcagaaaataagaataggaggaataataatctggtgctgaataatgcttgtttggttc |
16413734 |
T |
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| Q |
228 |
tttg |
231 |
Q |
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|||| |
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| T |
16413735 |
tttg |
16413738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 26723662 - 26723559
Alignment:
| Q |
130 |
tgttggtgataatctagagagaaccggtctgctaagttatgcagaaaataaaaataggaggaataataatc---tagtgctgaataatgcttgtttggtt |
226 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||| ||||||| |
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| T |
26723662 |
tgttggtgatattctagagagaatcggtctgctaagttatgcagaaaataagaataggaggaataataataatttggtgctgaataatgcttatttggtt |
26723563 |
T |
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| Q |
227 |
cttt |
230 |
Q |
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|||| |
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| T |
26723562 |
cttt |
26723559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 26617734 - 26617635
Alignment:
| Q |
130 |
tgttggtgataatctagagagaaccggtctgctaagttatgcagaaaataaaaataggaggaataataatc---tagtgctgaataatgcttgtttggtt |
226 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||| ||||||| |
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| T |
26617734 |
tgttggtgatattctagagagaatcggtctgctaagttatgcagaaaataagaataggaggaataataataatttggtgctgaataatgcttatttggtt |
26617635 |
T |
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