View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10170_low_1 (Length: 867)
Name: NF10170_low_1
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10170_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 214 - 504
Target Start/End: Original strand, 41456338 - 41456630
Alignment:
| Q |
214 |
atatatagacttttcctccttcacatgtaaattt-atcttgtaacctgacacctcttatagttttagacatcaagttacttagtcttctgcttttcggta |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||| | || ||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
41456338 |
atatatggacttttcctccttcacatgtaaattttatcttgtaagctgactcctttgatggttttagacatcaagttgcttagtcttttgcttttcgatg |
41456437 |
T |
|
| Q |
313 |
ttttccttttgatnnnnnnnn-tcatttgcacacacaattaatacaatcacataaaaatacatataatttaatcaaattagaaatatatagttttaattc |
411 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41456438 |
ttttccttttgataaaaaaaaatcatttgcacacacaattaatacaatcacataaaaatacatataatttaatcaaattagaaatatatagttttaattc |
41456537 |
T |
|
| Q |
412 |
cttttctcttcctgcatttttcatatatatgtgtgcctaactagtgttctcaaacacttgtcattgtataaaacttcctatcatttaacatca |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41456538 |
cttttctcttcctgcatttttcatatatatgtgtgcctaactagtgtgctcaaacacttgtcatcgtataaaacttcctatcatttaacatca |
41456630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 41456082 - 41456292
Alignment:
| Q |
8 |
agaagcaaaggcacagatgaagttgataatccaacctaaaaaatttgtagtgtgttggctagaaatatttttattaggtgtgtctaatacgaaaaatatt |
107 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41456082 |
agaatcaaaggcatagatgaagttgataatccaacctcaaagatttgtagtgtgttggctagaaatatttttattaggtgtgtctaatatgaaaaatatt |
41456181 |
T |
|
| Q |
108 |
tgggcacgcaaacaaatacaaacttaaatagaaattatttggtcactacatttaacagaaaatacttgggaggtttcctttt-ccgtacattgagaaaag |
206 |
Q |
| |
|
| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
41456182 |
taggcacgcgcacaaatacaaacttaaataaaaattatttggtcactacatttaacagaaaatacttgggaggttttcttttcccgtacattgagaaaat |
41456281 |
T |
|
| Q |
207 |
gtaatgaatat |
217 |
Q |
| |
|
||||||||||| |
|
|
| T |
41456282 |
gtaatgaatat |
41456292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 540 - 694
Target Start/End: Original strand, 41456666 - 41456820
Alignment:
| Q |
540 |
gtacctaaatgtttttcatctaaggttgtgttcgattaagtatttgtcatatgtttttgccttgttgtatttggtctataaattcgagctttgtctataa |
639 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41456666 |
gtacccaaatatttttcatctaaggttgtgttcgattaagtatttctcatatgtttttccctcgttatatttggtctataaattcgagctttgtctataa |
41456765 |
T |
|
| Q |
640 |
atgcccttgtaaatatcattttcaacaaacaataaaattgtcatctttcctcgca |
694 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41456766 |
atgcccttgtaaatatcattttcaacaaacaataaaattgtcatctttactcgca |
41456820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 745 - 852
Target Start/End: Original strand, 41456871 - 41456978
Alignment:
| Q |
745 |
ataattcaccaaaaaccaaacaatctagacttcacactctttaaaagagttaataaaccaacaactaagggacataattccttccttaattcacttttaa |
844 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41456871 |
ataattcaccaaaaaccaaacaatctagacttcacactctttaaaagagttaataaaccaacaactaagggacataattccttccttaattcacttttaa |
41456970 |
T |
|
| Q |
845 |
gatctatt |
852 |
Q |
| |
|
|||||||| |
|
|
| T |
41456971 |
gatctatt |
41456978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University