View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10170_low_10 (Length: 312)
Name: NF10170_low_10
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10170_low_10 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 2842537 - 2842848
Alignment:
| Q |
1 |
tcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgttctgtattattcgtac |
100 |
Q |
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| T |
2842537 |
tcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgttctgtattattggtac |
2842636 |
T |
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| Q |
101 |
aatcttgcttaacaataggtacagtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttccattcactaagccgcac |
200 |
Q |
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| T |
2842637 |
aatcttgcttaacaataagtacagtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttccattcactaagccgcac |
2842736 |
T |
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| Q |
201 |
ctctgctgacttcgaatgcaactcgcaactttctgtcaaactcatttgcctataagtttcaagttccttttccnnnnnnngattctccctttcccttctt |
300 |
Q |
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| T |
2842737 |
ctctgctgacttcgaatgcaactcgcaactttctgtcaaactcatttgcctaaaagtttcaagttccttttccaaaaaaagattttccctttcccttctt |
2842836 |
T |
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| Q |
301 |
ataagaatctct |
312 |
Q |
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|||||||||||| |
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| T |
2842837 |
ataagaatctct |
2842848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 2838683 - 2838747
Alignment:
| Q |
248 |
gcctataagtttcaagttccttttccnnnnnnngattctccctttcccttcttataagaatctct |
312 |
Q |
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| T |
2838683 |
gcctataactttcaagttccttttccaaaaagagattctccttttcccttcttataagaatctct |
2838747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 2838511 - 2838590
Alignment:
| Q |
1 |
tcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttc |
80 |
Q |
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| T |
2838511 |
tcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttc |
2838590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 2838645 - 2838679
Alignment:
| Q |
135 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
169 |
Q |
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| T |
2838645 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
2838679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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