View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10170_low_11 (Length: 285)
Name: NF10170_low_11
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10170_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 36170744 - 36170481
Alignment:
| Q |
18 |
attggtacactcacctcctcaaaaattcaccaacaggaaccatccacatccatgtgctcaacaacaccatcacatgcaacccacaaaacatagaacacat |
117 |
Q |
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| T |
36170744 |
attggtacactcacctcctcaaaaaatcaccaactggaaccatccacatccatgtgctcaacaacaccatcacatgcaacccacaaaacatagaacacat |
36170645 |
T |
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| Q |
118 |
gctcaaaacccgttttgataactacccaaaaggaaaaccattctctacaatccttggtgatcttcttggtaatggaatatttaacgttgatggtgtttca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36170644 |
gctcaaaacccgttttgataactacccaaaaggaaaaccattctctacaatccttggtgatcttcttggtaatggaatatttaacgttgacggtgtttca |
36170545 |
T |
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| Q |
218 |
tggaacttccaacgtaaaatggcgagtctcgaactcacgagtgtaacggtacgttcctatgctt |
281 |
Q |
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| T |
36170544 |
tggaactttcaacgtaaaatggcaagtcttgaactcacaagtgtaacggtacgttcctacgctt |
36170481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 170 - 281
Target Start/End: Complemental strand, 37672138 - 37672027
Alignment:
| Q |
170 |
cttggtgatcttcttggtaatggaatatttaacgttgatggtgtttcatggaacttccaacgtaaaatggcgagtctcgaactcacgagtgtaacggtac |
269 |
Q |
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| T |
37672138 |
cttggtgatcttcttgatgatggaatatttaacgttgatggtgtttcatggaacttccaacgtaaaatggcaagcctagaactcacaagtgtaacggtac |
37672039 |
T |
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| Q |
270 |
gttcctatgctt |
281 |
Q |
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| T |
37672038 |
gttcctacgctt |
37672027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 37672139 - 37672230
Alignment:
| Q |
83 |
accatcacatgcaacccacaaaacatagaacacatgctcaaaacccgttttgataactacccaaaaggaaaacc----attctctacaatcc |
170 |
Q |
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| T |
37672139 |
accatcacatgcaacccacaaaacatagaacacatgctcaaaacctgtttggataacaatccaaaaggaaaaccaaccattctctacaatcc |
37672230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 19931851 - 19931897
Alignment:
| Q |
140 |
tacccaaaaggaaaaccattctctacaatccttggtgatcttcttgg |
186 |
Q |
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| T |
19931851 |
taccctaaaggtaaacaattctctacaatccttggtgatcttcttgg |
19931897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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