View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10170_low_13 (Length: 253)

Name: NF10170_low_13
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10170_low_13
NF10170_low_13
[»] chr1 (3 HSPs)
chr1 (18-253)||(24898624-24898855)
chr1 (14-253)||(24891112-24891344)
chr1 (78-253)||(24906139-24906314)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 24898624 - 24898855
Alignment:
Q  18 gatacactataaataacaacaataccaccacccttctctcatattcattcattcattctttttctcaactctccatcaaaaaactaaaacatttcaaagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||| |||||| | ||| |||||||| ||    
T  24898624 gatacactataaataacaacaataccaccacccttctctcatattc----attcattctttttctcaactctccaccaaaaagcaaaagcatttcaacgt 24898719  T
Q  118 ccaaataatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctatttcactacaactcatgaaggat 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24898720 ccaaacaatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctatttcactacaactcatgaatgat 24898819  T
Q  218 ccagttactgtctcaacaggcataacctacgacaga 253  Q
    ||||||||||||||||||||||||||||||||||||    
T  24898820 ccagttactgtctcaacaggcataacctacgacaga 24898855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 24891344 - 24891112
Alignment:
Q  14 cacagatacactataaataacaacaataccaccacccttctctcatattcattcattcattctttttctcaactctccatcaaaaaactaaaacatttca 113  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    ||||||||||||||||| |||||| | | |||||||||    
T  24891344 cacagatacactataaataacaa---taccaccacccttctctcatattcattcattc----tttttctcaactctccaccaaaaagcaataacatttca 24891252  T
Q  114 aagtccaaataatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctatttcactacaactcatgaa 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24891251 aagtccaaacaatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctatttcactacaactcatgaa 24891152  T
Q  214 ggatccagttactgtctcaacaggcataacctacgacaga 253  Q
     |||||||||||||||||||||||||||||||||||||||    
T  24891151 agatccagttactgtctcaacaggcataacctacgacaga 24891112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 78 - 253
Target Start/End: Original strand, 24906139 - 24906314
Alignment:
Q  78 tttctcaactctccatcaaaaaactaaaacatttcaaagtccaaataatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacacc 177  Q
    ||||||||||||||| |||||| | | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24906139 tttctcaactctccaccaaaaagcaataacatttcaaagtccaaacaatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacacc 24906238  T
Q  178 attttttctatgccctatttcactacaactcatgaaggatccagttactgtctcaacaggcataacctacgacaga 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24906239 attttttctatgccctatttcactacaactcatgaaggatccagttactgtctcaacaggcataacctacgacaga 24906314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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