View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10170_low_15 (Length: 250)
Name: NF10170_low_15
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10170_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 49866855 - 49866613
Alignment:
| Q |
1 |
atatggtactatatatgttgtgtattattattatatgcatgtaacaagtactatcaaattaatttccnnnnnnnnnnnngtgtgcagtctcgcctcagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49866855 |
atatggtactatatatgttgtgtattattattatatgcatgtaacaagtactatcaaattaatttccttttttatttttgtgtgcagtctcgcctcagcg |
49866756 |
T |
|
| Q |
101 |
atacagcagcagcggctgtgaaaaaattgctgccagattatgcacaaaatgacttgtcaagtgtgtgctcatgggctgatcgtgtcaaattttatcttaa |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49866755 |
atacagcagcggcggctgtgaaaaaattgctgccagattatgcacaaaatgacttgtcaagtgtgtgctcatgggctgatcgtgtcaaattttatcttaa |
49866656 |
T |
|
| Q |
201 |
atggtcttctgctttgcactttgctgatacccctcctatgctt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49866655 |
atggtcttctgctttgcactttgctgatacccctcctaagctt |
49866613 |
T |
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