View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10170_low_16 (Length: 248)

Name: NF10170_low_16
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10170_low_16
NF10170_low_16
[»] chr1 (1 HSPs)
chr1 (1-242)||(46752014-46752258)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 46752258 - 46752014
Alignment:
Q  1 aggtttagcaaggctctccaccactgactttggattttagatgtctttttctaaagaaatcttatttcatgagattagtctccatagttaaatgtgcaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46752258 aggtttagcaaggctctccaccactgactttggattttagatgtcttgttataaagaaatcttgtttcatgagattagtctccatagttaaatgtgcaga 46752159  T
Q  101 ttaattaagttataataatgatttcggttaaaaattgaagtcgtgactagatgctgcttaacacat-cccatcccacatctaataatctgtcaatactac 199  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  46752158 ttaattaagttataataatcatttcggttaaaaattgaagtcgtgactagatgctgcttaacacatacacatcccacatctaataatctgtcaatactac 46752059  T
Q  200 gttggt----gaaacataagtgatatgaatatgttttgcctttgctt 242  Q
    ||||||    ||||||||||||||||||  ||||||||| |||||||    
T  46752058 gttggtgaaagaaacataagtgatatga--atgttttgcttttgctt 46752014  T

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