View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10170_low_17 (Length: 246)
Name: NF10170_low_17
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10170_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 17530179 - 17530406
Alignment:
| Q |
1 |
aggatcaagaacccaagggatattcaactgagagcatagattagcagcagctatcatagaaggaagagaagaagatgagagtgttccaacattaagacag |
100 |
Q |
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| T |
17530179 |
aggatcaagaacccaagggatatccaactgagagcatagcttagcagcagctatcatagcaggaagagaagaagatgagagtgttccaacattaagacag |
17530278 |
T |
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| Q |
101 |
agagcactgacacgtggagtgaattcatgaatctcttcgagtgaatgaaccattgctggtgatgctccagctgataagagagtattcgccattaaatcca |
200 |
Q |
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| T |
17530279 |
agagcactgacacgtggagtgaattcatgaatctcttcgagtgaatgaaccattgcaggtgatgcaccagctgataagagagtattcgccattaaatcca |
17530378 |
T |
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| Q |
201 |
ttgatacaaaattagttatgcattgaat |
228 |
Q |
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| T |
17530379 |
ttgatacaaaattagttatgcattgaat |
17530406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 17656357 - 17656130
Alignment:
| Q |
1 |
aggatcaagaacccaagggatattcaactgagagcatagattagcagcagctatcatagaaggaagagaagaagatgagagtgttccaacattaagacag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17656357 |
aggatcaagaacccaagggatattcaactgagagcatagcttagcagcagctatcatagcaggaagagaagaagatgagagtgttccaacattaagacag |
17656258 |
T |
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| Q |
101 |
agagcactgacacgtggagtgaattcatga-atctcttcgagtgaatgaaccattgctggtgatgctccagctgataagagagtattcgccattaaatcc |
199 |
Q |
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| T |
17656257 |
agagcacttactcgtggagtgaattc-tgatatctcttcgagtgaatgaaccattgctggtgatgctccagctgataagagagtattcgccattaaatcc |
17656159 |
T |
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| Q |
200 |
attgatacaaaattagttatgcattgaat |
228 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
17656158 |
attgatacgaaattagttatgcattgaat |
17656130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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