View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10170_low_23 (Length: 238)

Name: NF10170_low_23
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10170_low_23
NF10170_low_23
[»] chr8 (13 HSPs)
chr8 (1-224)||(22904193-22904416)
chr8 (37-173)||(22369882-22370025)
chr8 (71-179)||(14352340-14352455)
chr8 (10-224)||(18573087-18573308)
chr8 (32-173)||(22099783-22099933)
chr8 (32-173)||(21830954-21831104)
chr8 (32-173)||(22033683-22033833)
chr8 (37-173)||(11347086-11347237)
chr8 (99-178)||(20375794-20375875)
chr8 (37-173)||(22102332-22102475)
chr8 (82-173)||(19767466-19767565)
chr8 (107-179)||(17620676-17620750)
chr8 (113-174)||(15206881-15206943)
[»] chr3 (26 HSPs)
chr3 (1-179)||(8686486-8686674)
chr3 (1-179)||(16703079-16703264)
chr3 (37-173)||(3339359-3339502)
chr3 (37-173)||(14445898-14446039)
chr3 (37-179)||(13600991-13601141)
chr3 (5-179)||(17045626-17045808)
chr3 (5-179)||(17047786-17047968)
chr3 (37-173)||(12776667-12776810)
chr3 (37-173)||(13195593-13195738)
chr3 (37-173)||(20560944-20561089)
chr3 (37-173)||(20563252-20563397)
chr3 (37-173)||(20565560-20565705)
chr3 (37-173)||(15946548-15946691)
chr3 (71-173)||(15619451-15619562)
chr3 (107-179)||(11398137-11398211)
chr3 (71-179)||(17387762-17387875)
chr3 (107-178)||(1992726-1992799)
chr3 (72-179)||(4382673-4382789)
chr3 (5-105)||(20225856-20225956)
chr3 (71-160)||(22637644-22637738)
chr3 (71-179)||(3279114-3279229)
chr3 (107-179)||(15024650-15024724)
chr3 (71-173)||(13068078-13068188)
chr3 (107-173)||(13136401-13136468)
chr3 (109-179)||(20156754-20156826)
chr3 (135-179)||(14348839-14348883)
[»] chr1 (8 HSPs)
chr1 (6-179)||(16382679-16382866)
chr1 (37-173)||(21784605-21784747)
chr1 (37-173)||(8947648-8947789)
chr1 (37-173)||(4027623-4027762)
chr1 (72-179)||(3989866-3989982)
chr1 (71-179)||(8653048-8653162)
chr1 (107-177)||(19363959-19364031)
chr1 (37-105)||(19875782-19875850)
[»] chr6 (11 HSPs)
chr6 (8-179)||(29686372-29686551)
chr6 (71-173)||(11203785-11203894)
chr6 (37-173)||(35270777-35270922)
chr6 (110-179)||(20107998-20108069)
chr6 (37-105)||(18731730-18731798)
chr6 (107-179)||(19585754-19585828)
chr6 (107-179)||(25631483-25631557)
chr6 (107-179)||(25963168-25963242)
chr6 (107-179)||(25967815-25967889)
chr6 (135-173)||(8723968-8724006)
chr6 (71-152)||(2181013-2181099)
[»] chr2 (22 HSPs)
chr2 (3-179)||(24321102-24321283)
chr2 (37-179)||(24019195-24019344)
chr2 (10-179)||(25582878-25583052)
chr2 (37-173)||(24171284-24171427)
chr2 (1-101)||(20851605-20851705)
chr2 (10-179)||(15532678-15532852)
chr2 (32-173)||(27768944-27769094)
chr2 (107-173)||(25338255-25338321)
chr2 (71-173)||(23159552-23159663)
chr2 (71-173)||(23570809-23570920)
chr2 (71-173)||(26191803-26191916)
chr2 (64-173)||(23647907-23648025)
chr2 (37-173)||(27631435-27631578)
chr2 (71-179)||(23799091-23799206)
chr2 (107-179)||(24502088-24502162)
chr2 (29-179)||(25144884-25145044)
chr2 (10-87)||(29955744-29955821)
chr2 (119-179)||(25367843-25367906)
chr2 (113-224)||(19805833-19805945)
chr2 (107-179)||(25371099-25371173)
chr2 (29-179)||(5500392-5500550)
chr2 (107-178)||(25804479-25804552)
[»] chr5 (19 HSPs)
chr5 (10-221)||(17412460-17412675)
chr5 (37-173)||(18484345-18484486)
chr5 (71-173)||(22317681-22317790)
chr5 (37-173)||(25006941-25007082)
chr5 (71-173)||(26847581-26847690)
chr5 (32-173)||(30759783-30759931)
chr5 (37-173)||(25116306-25116451)
chr5 (37-173)||(25175397-25175542)
chr5 (37-105)||(22855576-22855644)
chr5 (113-179)||(27270044-27270111)
chr5 (113-179)||(27270189-27270256)
chr5 (71-135)||(20916625-20916691)
chr5 (29-179)||(24219674-24219834)
chr5 (107-173)||(20445052-20445119)
chr5 (113-161)||(27270352-27270401)
chr5 (94-179)||(20575433-20575520)
chr5 (116-177)||(22948442-22948505)
chr5 (29-160)||(23600763-23600904)
chr5 (107-173)||(22855495-22855562)
[»] scaffold0001 (1 HSPs)
scaffold0001 (29-224)||(83285-83486)
[»] chr7 (18 HSPs)
chr7 (37-177)||(4461378-4461527)
chr7 (37-173)||(5397053-5397198)
chr7 (32-173)||(27291273-27291423)
chr7 (37-173)||(825561-825706)
chr7 (41-173)||(14221856-14221995)
chr7 (37-173)||(15065708-15065851)
chr7 (107-179)||(4312486-4312560)
chr7 (37-173)||(15206718-15206861)
chr7 (114-178)||(15348344-15348408)
chr7 (37-105)||(15916909-15916977)
chr7 (64-173)||(4791543-4791657)
chr7 (6-89)||(6713173-6713256)
chr7 (37-173)||(18287541-18287684)
chr7 (138-179)||(6713278-6713319)
chr7 (107-179)||(20108295-20108369)
chr7 (107-179)||(48801988-48802062)
chr7 (107-173)||(15916991-15917058)
chr7 (94-179)||(12549002-12549089)
[»] scaffold0094 (1 HSPs)
scaffold0094 (6-179)||(964-1144)
[»] chr4 (13 HSPs)
chr4 (1-105)||(9488977-9489081)
chr4 (6-105)||(12515046-12515145)
chr4 (37-173)||(15865427-15865570)
chr4 (29-179)||(17485037-17485195)
chr4 (37-171)||(14654131-14654273)
chr4 (32-173)||(10650325-10650475)
chr4 (37-173)||(15260242-15260385)
chr4 (37-173)||(15409309-15409452)
chr4 (29-179)||(10630681-10630839)
chr4 (72-179)||(18081631-18081747)
chr4 (37-173)||(16682687-16682834)
chr4 (71-152)||(8092598-8092684)
chr4 (107-179)||(3354566-3354640)
[»] scaffold0157 (2 HSPs)
scaffold0157 (6-105)||(5766-5865)
scaffold0157 (113-157)||(5882-5926)
[»] scaffold0035 (1 HSPs)
scaffold0035 (37-173)||(50639-50782)
[»] scaffold0011 (2 HSPs)
scaffold0011 (39-173)||(172040-172181)
scaffold0011 (37-173)||(161783-161926)
[»] scaffold0218 (1 HSPs)
scaffold0218 (71-173)||(25625-25736)
[»] scaffold0078 (1 HSPs)
scaffold0078 (37-172)||(30427-30569)
[»] scaffold0258 (1 HSPs)
scaffold0258 (37-146)||(22288-22405)
[»] scaffold0861 (1 HSPs)
scaffold0861 (33-173)||(696-841)
[»] scaffold0088 (1 HSPs)
scaffold0088 (65-173)||(37650-37764)
[»] scaffold0566 (1 HSPs)
scaffold0566 (71-173)||(2539-2650)
[»] scaffold0089 (1 HSPs)
scaffold0089 (39-173)||(54986-55129)
[»] scaffold0056 (1 HSPs)
scaffold0056 (37-105)||(42099-42167)
[»] scaffold0375 (1 HSPs)
scaffold0375 (64-173)||(12516-12632)
[»] scaffold0031 (1 HSPs)
scaffold0031 (64-173)||(22543-22659)
[»] scaffold0278 (1 HSPs)
scaffold0278 (107-178)||(13216-13289)
[»] scaffold0512 (1 HSPs)
scaffold0512 (37-105)||(5094-5162)
[»] scaffold0384 (1 HSPs)
scaffold0384 (71-173)||(10499-10608)
[»] scaffold0059 (1 HSPs)
scaffold0059 (109-179)||(12367-12439)
[»] scaffold0037 (2 HSPs)
scaffold0037 (32-105)||(72700-72773)
scaffold0037 (32-105)||(84890-84963)
[»] scaffold0013 (1 HSPs)
scaffold0013 (109-179)||(232959-233031)
[»] scaffold0116 (1 HSPs)
scaffold0116 (71-173)||(37911-38020)
[»] scaffold0029 (1 HSPs)
scaffold0029 (107-179)||(123298-123372)
[»] scaffold0026 (1 HSPs)
scaffold0026 (107-179)||(10978-11052)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22904416 - 22904193
Alignment:
Q  1 actcatgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22904416 actcatgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagt 22904317  T
Q  101 gtgtgctccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaaccnnnnnnngttctttttcattt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  22904316 gtgtgctccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaaccaaaaaaagttctttttcattt 22904217  T
Q  201 catataaagaatgtgggaattctt 224  Q
    ||||||||||||||||||||||||    
T  22904216 catataaagaatgtgggaattctt 22904193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 22370025 - 22369882
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtg 130  Q
    |||||||||||||||||| |||  |  |||||  |||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||     
T  22370025 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgta 22369926  T
Q  131 taag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||  ||||||||||||  |||||||||||||||||||||||||    
T  22369925 taagatagatattatgag-gaacaggttctaaccttaacactaaa 22369882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 14352340 - 14352455
Alignment:
Q  71 attcaacccaacaa-caagtcttaagtgagtgtgtgc----tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaacct 163  Q
    |||||||||||||| ||||||| |||||||||||||     ||||||| ||||||||||||||| |||||  ||||||||||| ||||||||||||||||    
T  14352340 attcaacccaacaatcaagtctcaagtgagtgtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgaggaaacaggttctaacct 14352439  T
Q  164 taacactaaaccaacc 179  Q
    ||| ||||||||||||    
T  14352440 taagactaaaccaacc 14352455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 18573087 - 18573308
Alignment:
Q  10 tcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--- 106  Q
    ||||||||||| ||||| | | |||| ||| |||||||| |||||   || ||||||||| ||||||||||||||||| | | |||||||||| ||        
T  18573087 tcctccaaggctttgttttcatcgtacacttatcacaacctcaagtgcttctcatgaacctattcaacccaacaacaaatttcaagtgagtgtttgtgtg 18573186  T
Q  107 ---tccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaac-cttaacactaaaccaaccnnnnnnngttcttt-ttcatttc 201  Q
       |||| | |||||||||| |||||||||||| ||||||||| ||||||||||||||  |||| ||||||||||||       ||| ||| ||||||||    
T  18573187 tagtccagc-tttttcttgcacctgtgtaagaggtattatgaggaaacaggttctaacttttaatactaaaccaaccgagaaaagttttttcttcatttc 18573285  T
Q  202 atataaagaatgtgggaattctt 224  Q
    ||||||  |||||||||||||||    
T  18573286 atataagaaatgtgggaattctt 18573308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 22099783 - 22099933
Alignment:
Q  32 cgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgc 123  Q
    |||| |||||||||||||||||| ||| ||  | |||  ||||||||||||||||| |||||||||||||| ||         ||||||| |||||||||    
T  22099783 cgtacactaatcacaacttcaagtattctttgtaaacttattcaacccaacaacaaatcttaagtgagtgtatgtgtgtgtagtccaacccttttcttgc 22099882  T
Q  124 tcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||||| |||||  ||||||||||| || |||||||||||||||||||||||    
T  22099883 tcctgtataagatagatattatgaggaa-caggttctaaccttaacactaaa 22099933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 21831104 - 21830954
Alignment:
Q  32 cgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtga--------gtgtgtgctccaacctttttcttgc 123  Q
    |||| |||||||||||||||||| ||| ||  | |||  ||||||||||||||||| ||||||||||        ||||||  ||||||| |||||||||    
T  21831104 cgtacactaatcacaacttcaagtattctttgtaaacttattcaacccaacaacaaatcttaagtgagtgtatgtgtgtgtagtccaacccttttcttgc 21831005  T
Q  124 tcctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||| | ||||  ||||||||||||  |||||||||||||||||||||||||    
T  21831004 tcctatataagatagatattatgag-gaacaggttctaaccttaacactaaa 21830954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 22033683 - 22033833
Alignment:
Q  32 cgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtga--------gtgtgtgctccaacctttttcttgc 123  Q
    |||| |||||||||||||||||| ||| ||  | |||  ||||||||||||||||| ||||||||||        ||||||  ||||||| |||||||||    
T  22033683 cgtacactaatcacaacttcaagtattctttgtaaacttattcaacccaacaacaaatcttaagtgagtgtatgtgtgtgtagtccaacccttttcttgc 22033782  T
Q  124 tcctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||||| ||||  | ||||||||||  |||||||||||||||||||||||||    
T  22033783 tcctgtataagatatatattatgag-gaacaggttctaaccttaacactaaa 22033833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 11347086 - 11347237
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg--------------ctccaacctttttcttg 122  Q
    |||||||||||||||||| |||  |  |||||  |||||||||||||||||||||||||||||||||||               ||||||| ||||||||    
T  11347086 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaagtgagtgtgtgtgtgtgtgtgtgtagtccaacccttttcttg 11347185  T
Q  123 ctcctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||||| ||||  ||||||||||||  |||||||||||||||||||||||||    
T  11347186 ctcctgtataagatagatattatgag-gaacaggttctaaccttaacactaaa 11347237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 20375875 - 20375794
Alignment:
Q  99 gtgtgtgctccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaaccaac 178  Q
    ||||||| ||||||| ||||||||||||||| ||||  |||||||||||| |||||| |||||| | || ||||||||||||    
T  20375875 gtgtgtggtccaacccttttcttgctcctgtataagatagatattatgaggaaacagattctaatcctagcactaaaccaac 20375794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 22102475 - 22102332
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtg 130  Q
    ||||||||||||||||||||||  |  | |||  ||||||||| ||||||| | | ||||||||| |||       ||||||| |||||||||||||||     
T  22102475 actaatcacaacttcaagcattccttgtaaacttattcaacccgacaacaaatttcaagtgagtgcgtgtgtgtagtccaacccttttcttgctcctgta 22102376  T
Q  131 taaga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||||  ||||||||||| || |||||||||||||||||||||||    
T  22102375 taagatggatattatgaggaa-caggttctaaccttaacactaaa 22102332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 19767565 - 19767466
Alignment:
Q  82 caacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||||||||||||||||||||||       ||||||| ||| ||||||| ||| |||||  ||||||||||| ||  ||||||||||||||||||||||    
T  19767565 caacaagtcttaagtgagtgtgtgtgtgtagtccaaccctttccttgctcttgtataagatagatattatgaggaacaaggttctaaccttaacactaaa 19767466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 17620750 - 17620676
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||||||||| |||||  ||||||||||| ||||| ||||||| | ||  ||||||||||||    
T  17620750 tccaacccttttcttgctcctgtataagatagatattatgaggaaacatgttctaatcctagtactaaaccaacc 17620676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 15206943 - 15206881
Alignment:
Q  113 ctttttcttgctcctgtgtaagagatattatgag-aaaacaggttctaaccttaacactaaac 174  Q
    |||||| || ||||||||||| || ||||||||| |||||| ||||||||||||||| |||||    
T  15206943 cttttttttactcctgtgtaaaaggtattatgaggaaaacaagttctaaccttaacaataaac 15206881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 8686486 - 8686674
Alignment:
Q  1 actcatgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagt 100  Q
    |||||||||||||||||||  ||||||||   ||| |||||||| |||||||||||||| | ||||||| ||||||||||||||||||||||||||||||    
T  8686486 actcatgtctcctccaaggttttgttctagtagtacactaatcagaacttcaagcatttcttatgaacctattcaacccaacaacaagtcttaagtgagt 8686585  T
Q  101 gtgtg----------ctccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    |||||           |||| || |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  8686586 gtgtgtgtgtgtgtagtccatcccttttcttgctcctgtgtaagagatattatgaggaaacaggttgtaaccttaacactaaaccaacc 8686674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 16703264 - 16703079
Alignment:
Q  1 actcatgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagt 100  Q
    |||||||||||||||||||  |||| |||| | || |||||||||||||||| |||||| | ||||||  ||||||||||||||||||||| ||||||||    
T  16703264 actcatgtctcctccaaggttttgtcctaaccatacactaatcacaacttcacgcatttctaatgaacttattcaacccaacaacaagtctcaagtgagt 16703165  T
Q  101 --------gtgtgctccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
            ||||  |||| || |||||||||| |||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  16703164 gtgtctgtgtgtagtccagcccttttcttgcttctgtgtaagagatattatgag-gaacaggttctaaccctaacactaaaccaacc 16703079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 3339359 - 3339502
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtg 130  Q
    |||||||||||||||||| |||  |  |||||  |||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||     
T  3339359 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgta 3339458  T
Q  131 taag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||  ||||||||||||  |||||||||||||||||||||||||    
T  3339459 taagatagatattatgag-gaacaggttctaaccttaacactaaa 3339502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 14445898 - 14446039
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc----tccaacctttttcttgctcctgtgta 132  Q
    |||||||||||||||||| |||  |  |||||  |||||||||||||||||||||||||||||||||||     ||||||| ||||||| ||| ||| ||    
T  14445898 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaagtgagtgtgtgtgtagtccaacccttttcttactcttgtata 14445997  T
Q  133 aga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||  |||||||||||||| |||||||||||||||||||||||    
T  14445998 agatagatattatgagaaa-caggttctaaccttaacactaaa 14446039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 13601141 - 13600991
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtg 130  Q
    ||||||||||||||||||||||  |  |||||| ||||||||||||||||||| | |||||||||||||       ||||||| ||||||||||||| |     
T  13601141 actaatcacaacttcaagcattccttgtgaacctattcaacccaacaacaagtttcaagtgagtgtgtgtgtgaagtccaaccattttcttgctcctata 13601042  T
Q  131 taag--agatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||  |||||||||| | ||||| ||||||| |||| |||||||||||||    
T  13601041 taagatagatattatgcggaaacatgttctaatcttagcactaaaccaacc 13600991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 17045808 - 17045626
Alignment:
Q  5 atgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgt 104  Q
    |||||||||| ||||| || ||  ||| ||| |||||||||||||||||| |||  |  |||||| ||||||||||||||||| |   ||||||||||||    
T  17045808 atgtctcctcaaaggctttatttcaagtgtacactaatcacaacttcaagtattccttgtgaacctattcaacccaacaacaaattccaagtgagtgtgt 17045709  T
Q  105 gc------tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    |       ||||||| ||||||||||| ||| ||| |  ||||||||||| |||||||||||||||||| |||||||||||||    
T  17045708 gtgtgaagtccaacccttttcttgctcatgtataaaatagatattatgaggaaacaggttctaaccttagcactaaaccaacc 17045626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 17047968 - 17047786
Alignment:
Q  5 atgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgt 104  Q
    |||||||||| ||||| || ||  ||| ||| |||||||||||||||||| |||  |  |||||| ||||||||||||||||| |   ||||||||||||    
T  17047968 atgtctcctcaaaggctttatttcaagtgtacactaatcacaacttcaagtattccttgtgaacctattcaacccaacaacaaattccaagtgagtgtgt 17047869  T
Q  105 gc------tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    |       ||||||| ||||||||||| ||| ||| |  ||||||||||| |||||||||||||||||| |||||||||||||    
T  17047868 gtgtgaagtccaacccttttcttgctcatgtataaaatagatattatgaggaaacaggttctaaccttagcactaaaccaacc 17047786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 12776667 - 12776810
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtg 130  Q
    |||||||||||||||||| |||  |  |||||  ||||||||||||||||||||| |||||||||||||       ||||||| |||||||||||||||     
T  12776667 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtctcaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgta 12776766  T
Q  131 taag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||  ||||||||||||  || ||||||||||||||||||||||    
T  12776767 taagatagatattatgag-gaagaggttctaaccttaacactaaa 12776810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 13195593 - 13195738
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgctcctg 128  Q
    |||||||||||||||||| |||  |   ||||  ||||||||||||| |||||||||||||||||||||         ||||||||||||||||||||||    
T  13195593 actaatcacaacttcaagtattccttgagaacttattcaacccaacatcaagtcttaagtgagtgtgtgtgtgtgtagtccaacctttttcttgctcctg 13195692  T
Q  129 tgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    | ||||  ||||||||||||  |||||||||||||||||||||||||    
T  13195693 tataagatagatattatgag-gaacaggttctaaccttaacactaaa 13195738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 20561089 - 20560944
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgctcctg 128  Q
    |||||||||||||||||| ||| ||  | |||  ||||||||||||||||| |||||||||||||| ||         ||||||| ||||||||||||||    
T  20561089 actaatcacaacttcaagtattctttgtaaacttattcaacccaacaacaaatcttaagtgagtgtatgtgtgtgtagtccaacccttttcttgctcctg 20560990  T
Q  129 tgtaaga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    | |||||  ||||||||||| || |||||||||||||||||||||||    
T  20560989 tataagatagatattatgaggaa-caggttctaaccttaacactaaa 20560944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 20563397 - 20563252
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgctcctg 128  Q
    |||||||||||||||||| ||| ||  | |||  ||||||||||||||||| |||||||||||||| ||         ||||||| ||||||||||||||    
T  20563397 actaatcacaacttcaagtattctttgtaaacttattcaacccaacaacaaatcttaagtgagtgtatgtgtgtgtagtccaacccttttcttgctcctg 20563298  T
Q  129 tgtaaga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    | |||||  ||||||||||| || |||||||||||||||||||||||    
T  20563297 tataagatagatattatgaggaa-caggttctaaccttaacactaaa 20563252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 20565705 - 20565560
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgctcctg 128  Q
    |||||||||||||||||| ||| ||  | |||  ||||||||||||||||| |||||||||||||| ||         ||||||| ||||||||||||||    
T  20565705 actaatcacaacttcaagtattctttgtaaacttattcaacccaacaacaaatcttaagtgagtgtatgtgtgtgtagtccaacccttttcttgctcctg 20565606  T
Q  129 tgtaaga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    | |||||  ||||||||||| || |||||||||||||||||||||||    
T  20565605 tataagatagatattatgaggaa-caggttctaaccttaacactaaa 20565560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 15946691 - 15946548
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtg 130  Q
    ||||||||||||||||||||||  |  | |||  ||||||||| ||||||| ||| |||||||||||||       ||||||| |||||||||||||||     
T  15946691 actaatcacaacttcaagcattccttgtaaacttattcaacccgacaacaaatctcaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgta 15946592  T
Q  131 taaga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||||  ||||||||||| ||  ||||||||||||||||||||||    
T  15946591 taagatagatattatgaggaag-aggttctaaccttaacactaaa 15946548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 15619451 - 15619562
Alignment:
Q  71 attcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaa 160  Q
    ||||||||||||||||| |||||||||||||| ||         ||||||| ||||||||||||||| |||||  ||||||||||| || ||||||||||    
T  15619451 attcaacccaacaacaaatcttaagtgagtgtatgtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgaggaa-caggttctaa 15619549  T
Q  161 ccttaacactaaa 173  Q
    |||||||||||||    
T  15619550 ccttaacactaaa 15619562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 11398211 - 11398137
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||||||||| |||||  ||||||||||| ||||||||||||| | || |||||||||||||    
T  11398211 tccaacccttttcttgctcctgtataagatagatattatgaggaaacaggttctaatcctagcactaaaccaacc 11398137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 17387875 - 17387762
Alignment:
Q  71 attcaacccaacaa-caagtcttaagtgagtgtgtgc--tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaacctta 165  Q
    |||||||||||||| ||||| | |||||||||||||   ||||||| |||||||||| |||| |||||  ||||||||||| |||| |||||||| | ||    
T  17387875 attcaacccaacaatcaagtttaaagtgagtgtgtgtagtccaacccttttcttgctactgtataagatagatattatgaggaaaccggttctaatccta 17387776  T
Q  166 acactaaaccaacc 179  Q
     |||||||||||||    
T  17387775 gcactaaaccaacc 17387762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 1992799 - 1992726
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaac 178  Q
    ||||||| ||||||||||||||| |||||  ||||||||||| ||||||||||||| | || ||||||||||||    
T  1992799 tccaaccattttcttgctcctgtataagatagatattatgaggaaacaggttctaatcctagcactaaaccaac 1992726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 4382789 - 4382673
Alignment:
Q  72 ttcaacccaacaa-caagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaacc 162  Q
    ||||||||||||| |||||||||||||||||||||       ||||||| ||||||||||||||| |||||  ||||||||||| ||||| ||||||| |    
T  4382789 ttcaacccaacaatcaagtcttaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgaggaaacatgttctaatc 4382690  T
Q  163 ttaacactaaaccaacc 179  Q
     ||  ||||||||||||    
T  4382689 ctagtactaaaccaacc 4382673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 20225856 - 20225956
Alignment:
Q  5 atgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgt 104  Q
    |||||||||| ||||| || ||  ||| ||| ||||||||||||||||||||||  |  |||||| |||||||||| |||||||| | |||| |||||||    
T  20225856 atgtctcctcaaaggctttatttcaagtgtacactaatcacaacttcaagcattccttgtgaacctattcaacccagcaacaagtttcaagtaagtgtgt 20225955  T
Q  105 g 105  Q
    |    
T  20225956 g 20225956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 22637738 - 22637644
Alignment:
Q  71 attcaacccaacaa-caagtcttaagtgagtgtgtgc--tccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaa 160  Q
    |||||||||||||| ||||| | |||||||||||||   ||||||||||||||| ||||||| ||||  |||||||||||| |||| ||||||||    
T  22637738 attcaacccaacaatcaagtttcaagtgagtgtgtgtagtccaacctttttcttactcctgtataagatagatattatgaggaaaccggttctaa 22637644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 3279229 - 3279114
Alignment:
Q  71 attcaacccaacaa-caagtcttaagtgagtgtgtgc----tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaacct 163  Q
    |||||||||||||| |||||  ||||||||||||||     ||||||| ||||||||| ||| | || ||  ||||||||||| ||||| |||||||| |    
T  3279229 attcaacccaacaatcaagttctaagtgagtgtgtgtgtagtccaaccattttcttgcgcctatatatgatagatattatgaggaaacaagttctaactt 3279130  T
Q  164 taacactaaaccaacc 179  Q
    ||||||||||||||||    
T  3279129 taacactaaaccaacc 3279114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 15024724 - 15024650
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||||||||| |||||  ||||||||||| ||||| ||||||| | || |||||||||||||    
T  15024724 tccaaccattttcttgctcctgtataagatagatattatgaggaaacatgttctaatcctagcactaaaccaacc 15024650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 13068188 - 13068078
Alignment:
Q  71 attcaacccaacaacaagtcttaa-gtgagtgtgtgc------tccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaac 161  Q
    |||||||||| ||||||||||||| |||||||||||       ||||||| ||||||||||||||| ||||  |||||||||||| ||| |||||||| |    
T  13068188 attcaacccatcaacaagtcttaaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgaggaaa-aggttctatc 13068090  T
Q  162 cttaacactaaa 173  Q
    || |||||||||    
T  13068089 ctcaacactaaa 13068078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 13136401 - 13136468
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||||| ||||||||||||||| ||||  ||||||||||||  ||||||||||||| |||||||||||    
T  13136401 tccaacccttttcttgctcctgtataagatagatattatgag-gaacaggttctaactttaacactaaa 13136468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 20156754 - 20156826
Alignment:
Q  109 caacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||| ||||||||||||||| |||||  ||||||||||||||||| |||| || | || |||||||||||||    
T  20156754 caacccttttcttgctcctgtataagatagatattatgagaaaacatgttcaaatcctagcactaaaccaacc 20156826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 14348839 - 14348883
Alignment:
Q  135 agatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    |||||||||||| ||||||||| ||| ||||| ||||||||||||    
T  14348839 agatattatgaggaaacaggttataagcttaagactaaaccaacc 14348883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 16382679 - 16382866
Alignment:
Q  6 tgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg 105  Q
    ||||||||||||||| ||||||| |  ||| ||||||||||||||||||||| | || |||||| ||||||||||||||||||||| |||||||||||||    
T  16382679 tgtctcctccaaggctttgttcttaaagtacactaatcacaacttcaagcatctctcgtgaaccgattcaacccaacaacaagtctcaagtgagtgtgtg 16382778  T
Q  106 --------------ctccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
                   ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  16382779 tgtgtgtgtgtgtagtccaacccttttcttgcccctgtgtaagagatattatgaggaaacaggttctaacctcaacactaaaccaacc 16382866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 21784605 - 21784747
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaacca-attcaacccaacaacaagtcttaagtgagtgtgtgc----tccaacctttttcttgctcctgtgt 131  Q
    |||||||||||||||||| |||| |  |||||   |||||||||||||||||||||||||||||||||||     ||||||| ||||||||||| ||| |    
T  21784605 actaatcacaacttcaagtatttcttgtgaactttattcaacccaacaacaagtcttaagtgagtgtgtgtgttgtccaacccttttcttgctcttgtat 21784704  T
Q  132 aag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||  |||||||||||| ||| |||||||| |||||||||||||    
T  21784705 aagatagatattatgaggaaa-aggttctatccttaacactaaa 21784747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 8947648 - 8947789
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc----tccaacctttttcttgctcctgtgta 132  Q
    |||||||||||||||||| |||  |  |||||| ||||||||||||||||||||| ||||||| |||||     ||||||| ||||||| ||||||| ||    
T  8947648 actaatcacaacttcaagtattccttgtgaacctattcaacccaacaacaagtctcaagtgagcgtgtgtgtagtccaaccattttctttctcctgtata 8947747  T
Q  133 aga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||  ||||||||||| || || ||||||||||||||||||||    
T  8947748 agacagatattatgaggaa-catgttctaaccttaacactaaa 8947789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 4027762 - 4027623
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg--ctccaacctttttcttgctcctgtgtaag 134  Q
    ||||||||||||| |||| |||  |  |||||| ||||||||||||||||||||| |||||||||||||   ||||||| ||||||||||| | | ||||    
T  4027762 actaatcacaactccaagtattccttgtgaacctattcaacccaacaacaagtctcaagtgagtgtgtgtagtccaaccattttcttgctcttatataag 4027663  T
Q  135 --agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
      | ||||||||||  |||| ||| ||||||||||||||||    
T  4027662 acatatattatgag-gaacatgttataaccttaacactaaa 4027623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 3989982 - 3989866
Alignment:
Q  72 ttcaacccaacaa-caagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaacc 162  Q
    ||||||||||||| |||||||||||||||||||||       ||||||| ||||||||||||||| |||||  ||||||||||| ||||| ||||||| |    
T  3989982 ttcaacccaacaatcaagtcttaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgaggaaacatgttctaatc 3989883  T
Q  163 ttaacactaaaccaacc 179  Q
     ||  ||||||||||||    
T  3989882 ctagtactaaaccaacc 3989866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 8653162 - 8653048
Alignment:
Q  71 attcaacccaacaa-caagtcttaagtgagtgtgtgc--tccaacctttttcttgctcctgtgtaag--agatattatga-gaaaacaggttctaacctt 164  Q
    |||||||||||||| |||||  |||||| |||||||   ||||||| ||||||||||||||| ||||  ||||||||||| ||||||||||||||| | |    
T  8653162 attcaacccaacaatcaagttctaagtgtgtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgaggaaaacaggttctaatcct 8653063  T
Q  165 aacactaaaccaacc 179  Q
    |  ||||||||||||    
T  8653062 agtactaaaccaacc 8653048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 19364031 - 19363959
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaa 177  Q
    ||||||| ||||||| ||| ||| |||||  |||||||| || ||||||||||||| | ||||||||||||||    
T  19364031 tccaacccttttcttactcatgtataagatagatattataaggaaacaggttctaatcctaacactaaaccaa 19363959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 19875782 - 19875850
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg 105  Q
    |||||| |||||||||||||||  |   ||||| ||||||||||||||||||||  || ||||||||||    
T  19875782 actaataacaacttcaagcattccttgcgaacctattcaacccaacaacaagtccgaaatgagtgtgtg 19875850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 29686551 - 29686372
Alignment:
Q  8 tctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaa-caagtcttaagtgagtgtgtgc 106  Q
    ||||||||||||| ||||| |  | ||| |||||||||||||||| |||||| ||||||||| |||||||||||||| ||||||| |||||||||||||     
T  29686551 tctcctccaaggctttgttattggtgtacactaatcacaacttcaggcatttctcatgaacctattcaacccaacaatcaagtctcaagtgagtgtgtgt 29686452  T
Q  107 --------tccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
            |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  29686451 gtgtgtagtccaac-tttttcttgctcctgtgtaagagatattatgaggaaacatgttctaaccttaacacttaaccaacc 29686372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 11203894 - 11203785
Alignment:
Q  71 attcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaacc 162  Q
    |||||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||| ||||  ||||||||||||  || |||||||||||    
T  11203894 attcaacccaacaacaagtcttaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgag-gaagaggttctaacc 11203796  T
Q  163 ttaacactaaa 173  Q
    |||||||||||    
T  11203795 ttaacactaaa 11203785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 35270922 - 35270777
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg--------ctccaacctttttcttgctcctg 128  Q
    |||||||||||||||||| |||  |  | |||  |||||||||||||||||||||||||||||||||||         ||||||| ||||||||||||||    
T  35270922 actaatcacaacttcaagtattccttgtaaacttattcaacccaacaacaagtcttaagtgagtgtgtgtgtgtgtagtccaacccttttcttgctcctg 35270823  T
Q  129 tgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    | ||||  ||||||||||||  |||| ||||||||||||||||||||    
T  35270822 tataagatagatattatgag-gaacaagttctaaccttaacactaaa 35270777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 20107998 - 20108069
Alignment:
Q  110 aacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    |||| ||||||||| ||||| |||||  ||||||||||| ||||||||||||||||||| ||||||||||||    
T  20107998 aacccttttcttgcgcctgtataagatagatattatgaggaaacaggttctaaccttaagactaaaccaacc 20108069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 18731798 - 18731730
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg 105  Q
    |||||||||||||||||| |||  |  |||||| ||||| ||||||||||||||| |||||||||||||    
T  18731798 actaatcacaacttcaagtattccttgtgaacctattcagcccaacaacaagtctcaagtgagtgtgtg 18731730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 19585754 - 19585828
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||| ||||| |||||  |||||||| || |||||||||| |||||||| ||||||||||||    
T  19585754 tccaacccttttcttgcgcctgtataagatagatattataaggaaacaggttccaaccttaagactaaaccaacc 19585828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 25631483 - 25631557
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||||||||| |||||  ||||||||||||||||| ||||||| | ||  ||||||||||||    
T  25631483 tccaacccttttcttgctcctgtataagatagatattatgagaaaacatgttctaatcctagtactaaaccaacc 25631557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 25963242 - 25963168
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||| ||||| |||||  ||||||||||| ||||||||||||||||||  |||| |||||||    
T  25963242 tccaacccttttcttgcgcctgtataagatagatattatgaggaaacaggttctaaccttatgactacaccaacc 25963168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 25967889 - 25967815
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||| ||||| |||||  ||||||||||| ||||||||||||||||||  |||| |||||||    
T  25967889 tccaacccttttcttgcgcctgtataagatagatattatgaggaaacaggttctaaccttatgactacaccaacc 25967815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 8723968 - 8724006
Alignment:
Q  135 agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||||||||||| || |||||||||||||||||||||||    
T  8723968 agatattatgaggaatcaggttctaaccttaacactaaa 8724006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 2181099 - 2181013
Alignment:
Q  71 attcaacccaacaac-aagtcttaagtgagtgtgtgc--tccaacctttttcttgctcctgtgtaag--agatattatgagaaaaca 152  Q
    ||||||| ||||||| |||| | |||||||||||||   ||||||| ||||||||||||||| ||||  |||||||||||| |||||    
T  2181099 attcaactcaacaaccaagtttcaagtgagtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgaggaaaca 2181013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 24321283 - 24321102
Alignment:
Q  3 tcatgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgt 102  Q
    |||||||||||||||||| ||||| ||   ||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| || |||||||    
T  24321283 tcatgtctcctccaaggctttgttttagtggtacactaatcacaacttcaagcatttctcatgaacctattcaacccaacaacaagtctcaaatgagtgt 24321184  T
Q  103 gtg------ctccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    |||       |||   ||||||||||||||||||||| |||||||||||| ||  || |||||||||||||||||||||||||    
T  24321183 gtgtgtgtagtcc-tgctttttcttgctcctgtgtaaaagatattatgaggaagaagattctaaccttaacactaaaccaacc 24321102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 179
Target Start/End: Original strand, 24019195 - 24019344
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgctcctg 128  Q
    |||||| |||| |||||| |||| ||||||||| ||||||||||||||||||| | |||||||||||||         |||| | |||||||||| ||||    
T  24019195 actaattacaatttcaagtatttctcatgaacctattcaacccaacaacaagtttcaagtgagtgtgtgtgtgtgtagtccagc-tttttcttgcgcctg 24019293  T
Q  129 tgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24019294 tgtaagagatattatgaggaaacaggttctaaccttaacactaaaccaacc 24019344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 25582878 - 25583052
Alignment:
Q  10 tcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--- 106  Q
    ||||||||||||||||  | |||||| |||  ||||||  ||||| | || ||||||||| ||||||||||||||||| | | |||||||||||||        
T  25582878 tcctccaaggcattgtgttcagcgtacacttctcacaaactcaagtacttatcatgaacctattcaacccaacaacaaatttcaagtgagtgtgtgtgtg 25582977  T
Q  107 ---tccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
       |||||| |||||||||| |||||||||||| |||||||||||||||||||||| | | |||||||||||||||    
T  25582978 tagtccaac-tttttcttgcgcctgtgtaagaggtattatgagaaaacaggttctaccttcaacactaaaccaacc 25583052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 24171427 - 24171284
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtg 130  Q
    ||||||||||||||| || |||  |  ||||||||||||||||||||||||||||||||||||||||||       ||||||  |||||||||||||||     
T  24171427 actaatcacaacttcgagtattccttgtgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgtgtgtagtccaactcttttcttgctcctgta 24171328  T
Q  131 taag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||  ||||||||||| | |||||||||||||||||||||||||    
T  24171327 taagatagatattatga-agaacaggttctaaccttaacactaaa 24171284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 20851705 - 20851605
Alignment:
Q  1 actcatgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagt 100  Q
    |||| ||||||||||||||| |||||  |||||||  |||||| |||| |||||||||| ||||||||| ||||||||||||| ||||||| ||||||||    
T  20851705 actcgtgtctcctccaaggctttgtttcaagcgtaccctaatcgcaacatcaagcatttctcatgaacctattcaacccaacatcaagtctcaagtgagt 20851606  T
Q  101 g 101  Q
    |    
T  20851605 g 20851605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 15532852 - 15532678
Alignment:
Q  10 tcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--- 106  Q
    ||||||||||| ||||| | |||||| ||| |||| ||  |||||   || | ||||||| ||||||||||||||||||| | |||||||||||||        
T  15532852 tcctccaaggctttgttttcagcgtacacttatcaaaaactcaagtgcttcttatgaacctattcaacccaacaacaagtttcaagtgagtgtgtgtgtg 15532753  T
Q  107 ---tccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
       |||| | |||||||||  ||| |||||||||||||||||| |||||||||||||||| |||| ||||| ||||    
T  15532752 tagtccagc-tttttcttgagcctatgtaagagatattatgaggaaacaggttctaacctcaacattaaactaacc 15532678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 27768944 - 27769094
Alignment:
Q  32 cgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtga--------gtgtgtgctccaacctttttcttgc 123  Q
    |||| |||||||||||||||||| ||| ||  | |||  ||||||||||||||||| ||||||||||        ||||||  ||||||| |||||||||    
T  27768944 cgtacactaatcacaacttcaagtattctttgtaaacttattcaacccaacaacaaatcttaagtgagtgtatgtgtgtgtagtccaacccttttcttgc 27769043  T
Q  124 tcctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||||| ||||  ||||||| ||||  |||||||||||||||||||||||||    
T  27769044 tcctgtataagatagatattttgag-gaacaggttctaaccttaacactaaa 27769094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 25338255 - 25338321
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||||| ||||||||||||||| ||||| |||||| ||| |||||||||||| |||||||||||||    
T  25338255 tccaacccttttcttgctcctgtataagatatattaagaggaaacaggttctagccttaacactaaa 25338321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 23159552 - 23159663
Alignment:
Q  71 attcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaa 160  Q
    ||||||||||||||||| ||| |||||||||||||         ||||||| ||||||||||||||| |||||  ||||||||||| || ||||||||||    
T  23159552 attcaacccaacaacaaatctcaagtgagtgtgtgtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgaggaa-caggttctaa 23159650  T
Q  161 ccttaacactaaa 173  Q
    |||||||||||||    
T  23159651 ccttaacactaaa 23159663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 23570809 - 23570920
Alignment:
Q  71 attcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaa 160  Q
    ||||||||||||||||| ||| |||||||||||||         ||||||| ||||||||||||||| |||||  ||||||||||| || ||||||||||    
T  23570809 attcaacccaacaacaaatctcaagtgagtgtgtgtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgaggaa-caggttctaa 23570907  T
Q  161 ccttaacactaaa 173  Q
    |||||||||||||    
T  23570908 ccttaacactaaa 23570920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 26191803 - 26191916
Alignment:
Q  71 attcaacccaacaacaagtcttaagtgagtgtgtgc----------tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttct 158  Q
    |||||||||||||||||||||||||||||||||||           | ||||| ||||||||||||||| |||||  ||||||||||| || ||||||||    
T  26191803 attcaacccaacaacaagtcttaagtgagtgtgtgtgtgtgtgtagttcaacccttttcttgctcctgtataagatagatattatgaggaa-caggttct 26191901  T
Q  159 aaccttaacactaaa 173  Q
    |||||||||||||||    
T  26191902 aaccttaacactaaa 26191916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 23648025 - 23647907
Alignment:
Q  64 tgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg--------ctccaacctttttcttgctcctgtgtaag--agatattatgagaaaacag 153  Q
    |||||| ||||||||||||||||||||| |||||||||||||         ||||||| ||||||||||||||| ||||  ||||||||||||  ||||     
T  23648025 tgaacctattcaacccaacaacaagtctcaagtgagtgtgtgtgtgtgtagtccaacccttttcttgctcctgtataagacagatattatgag-gaacat 23647927  T
Q  154 gttctaaccttaacactaaa 173  Q
    ||| ||||||||||||||||    
T  23647926 gttttaaccttaacactaaa 23647907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 27631578 - 27631435
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtg 130  Q
    ||||||||||||||||||||||  |  | |||  ||||||||| ||||||| | | |||||||||||||       ||||||| |||||||||||||||     
T  27631578 actaatcacaacttcaagcattccttgtaaacttattcaacccgacaacaaatttcaagtgagtgtgtgtgtgtagtccaaccattttcttgctcctgta 27631479  T
Q  131 taaga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    | |||  ||||||||||| || |||||||||||||||||||||||    
T  27631478 tgagatggatattatgaggaa-caggttctaaccttaacactaaa 27631435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 23799091 - 23799206
Alignment:
Q  71 attcaacccaacaa-caagtcttaagtgagtgtgtgc----tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaacct 163  Q
    |||||||||||||| |||||  ||||||||||||||     ||||||| ||||||||||| | | |||||  ||||||||||| ||||||||||||| |     
T  23799091 attcaacccaacaatcaagttctaagtgagtgtgtgtgtagtccaacccttttcttgctcatatataagatagatattatgaggaaacaggttctaatcc 23799190  T
Q  164 taacactaaaccaacc 179  Q
    || |||||||||||||    
T  23799191 tagcactaaaccaacc 23799206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 24502162 - 24502088
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||||||||| |||||  ||||||||||| ||||| ||||||| | || |||||||||||||    
T  24502162 tccaacccttttcttgctcctgtataagatagatattatgaggaaacatgttctaatcctagcactaaaccaacc 24502088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 25144884 - 25145044
Alignment:
Q  29 aagcgtaaactaatcacaacttcaagcatttttcatgaacca-attcaacccaacaa-caagtcttaagtgagtgtgtgc------tccaacctttttct 120  Q
    ||||||| |||||||||||  |||||||||| |  | ||||  |||||||||||||| ||||| | |||||||||||||       ||||||| ||||||    
T  25144884 aagcgtacactaatcacaaactcaagcatttcttgtaaaccttattcaacccaacaatcaagtttcaagtgagtgtgtgtgtgtagtccaacccttttct 25144983  T
Q  121 tgctcctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||||| ||||  |||||||||||| ||||| ||||||| | ||  ||||||||||||    
T  25144984 tgctcctgtataagatagatattatgaggaaacatgttctaatcctagtactaaaccaacc 25145044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 29955821 - 29955744
Alignment:
Q  10 tcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaa 87  Q
    ||||||||||| |||||   |||| | |||||||||||| |||||  ||| ||||||||| |||||||||||||||||    
T  29955821 tcctccaaggctttgtttccagcggacactaatcacaacctcaagtgtttctcatgaacctattcaacccaacaacaa 29955744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 25367843 - 25367906
Alignment:
Q  119 cttgctcctgtgtaagaga--tattatgag-aaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||||||| ||||| |  ||||||||| |||||||||||||| ||||||||||||||||||    
T  25367843 cttgctcctgtataagataaatattatgaggaaaacaggttctaatcttaacactaaaccaacc 25367906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 19805833 - 19805945
Alignment:
Q  113 ctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaaccnnnnnnngtt-ctttttcatttcatataaagaa 211  Q
    |||||| |||| ||||||||| || ||||||||| |||||||||||||| | |||| |||| |||||       ||| ||| ||||||||||||||  ||    
T  19805833 ctttttattgcgcctgtgtaaaaggtattatgaggaaacaggttctaacttcaacagtaaatcaaccgagaaaagttccttcttcatttcatataagaaa 19805932  T
Q  212 tgtgggaattctt 224  Q
     ||||||||||||    
T  19805933 ggtgggaattctt 19805945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 25371099 - 25371173
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||||||||| ||||  |||||||||||| ||||| ||||||| | || || ||||||||||    
T  25371099 tccaacccttttcttgctcctgtataagatagatattatgaggaaacaagttctaatcctagcattaaaccaacc 25371173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 5500392 - 5500550
Alignment:
Q  29 aagcgtaaactaatcacaacttcaagcatttttcatgaacca-attcaacccaacaa-caagtcttaagtgagtgtgtgc----tccaacctttttcttg 122  Q
    ||||||| |||||||||||  ||||||||||  | | ||||  ||||||| |||||| ||||| | |||||||||||||     ||||||  ||||||||    
T  5500392 aagcgtacactaatcacaaactcaagcatttcacgtaaaccttattcaactcaacaatcaagtttcaagtgagtgtgtgtgtagtccaactattttcttg 5500491  T
Q  123 ctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| |||||  ||||||||||| ||||| ||||||| | ||  ||||||||||||    
T  5500492 ctcctgtataagatagatattatgaggaaacatgttctaatcctagtactaaaccaacc 5500550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 25804479 - 25804552
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaac 178  Q
    ||||||| ||||||||||| ||| |||||  ||||||||||| ||||| ||||||| | || ||||||||||||    
T  25804479 tccaacccttttcttgctcttgtataagatagatattatgaggaaacaagttctaatcctagcactaaaccaac 25804552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 17412675 - 17412460
Alignment:
Q  10 tcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--- 106  Q
    ||||||||||| ||||| | ||| || |||||||||||| ||||||  || ||||||||| ||||||||||||||||  | | |||||||||||||        
T  17412675 tcctccaaggctttgttttcagcatacactaatcacaacctcaagcgcttctcatgaacctattcaacccaacaacatatttcaagtgagtgtgtgtgta 17412576  T
Q  107 -tccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaaccnnnnnnngttcttt-ttcatttcata 204  Q
     |||| | |||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||       ||||||| |||||||||||    
T  17412575 gtccagc-tttttcttgcgcctgtgtaagagatattatgaggaaacaggttctaacctcaacactaaaccaaccgagaaaagttctttcttcatttcata 17412477  T
Q  205 taaagaatgtgggaatt 221  Q
    |||   |||||||||||    
T  17412476 taagagatgtgggaatt 17412460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 18484345 - 18484486
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc----tccaacctttttcttgctcctgtgta 132  Q
    ||||||||||||||||||  ||  |  |||||  |||||||||||||||||||||||||||||||||||     ||||||| ||||||||||||||| ||    
T  18484345 actaatcacaacttcaagtgttccttgtgaacttattcaacccaacaacaagtcttaagtgagtgtgtgtgtagtccaacccttttcttgctcctgtata 18484444  T
Q  133 ag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||  ||||||||||||  |||| ||||||||||||||||||||    
T  18484445 agatagatattatgag-gaacatgttctaaccttaacactaaa 18484486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 22317681 - 22317790
Alignment:
Q  71 attcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaacc 162  Q
    |||||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||| ||||  ||||||||||||  || |||||||||||    
T  22317681 attcaacccaacaacaagtcttaagtgagtgtgtgtgtgtagtccaaccattttcttgctcctgtataagatagatattatgag-gaagaggttctaacc 22317779  T
Q  163 ttaacactaaa 173  Q
    |||||||||||    
T  22317780 ttaacactaaa 22317790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 25006941 - 25007082
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc----tccaacctttttcttgctcctgtgta 132  Q
    |||||||| |||||||||||||  |  | |||  ||||||||| ||||||| | | |||||||||||||     ||||||| ||||||||||||||| ||    
T  25006941 actaatcataacttcaagcattccttgtaaacttattcaacccgacaacaaatttcaagtgagtgtgtgtgtagtccaacccttttcttgctcctgtata 25007040  T
Q  133 aga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||  ||||||||||| || |||||||||||||||||||||||    
T  25007041 agatagatattatgaggaa-caggttctaaccttaacactaaa 25007082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 26847690 - 26847581
Alignment:
Q  71 attcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaacc 162  Q
    |||||||||||||||||||||||||||||||||||       ||||||| |||||||||| |||| | ||  | ||||||||||  ||||||||||||||    
T  26847690 attcaacccaacaacaagtcttaagtgagtgtgtgtgtgtagtccaacccttttcttgctgctgtatgagatatatattatgag-gaacaggttctaacc 26847592  T
Q  163 ttaacactaaa 173  Q
    |||||||||||    
T  26847591 ttaacactaaa 26847581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 30759783 - 30759931
Alignment:
Q  32 cgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctc 125  Q
    |||| |||||||||||||||||| |||  |  | |||  ||||||||||||||||| ||| |||||||||||||       ||||||| |||||||||||    
T  30759783 cgtacactaatcacaacttcaagtattccttgtaaacttattcaacccaacaacaaatctcaagtgagtgtgtgtgtgtagtccaacccttttcttgctc 30759882  T
Q  126 ctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||| ||||  ||||||||||||  |||||||||||||||| ||| ||||    
T  30759883 ctgtataagatagatattatgag-gaacaggttctaaccttgacaataaa 30759931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 25116306 - 25116451
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtga--------gtgtgtgctccaacctttttcttgctcctg 128  Q
    |||||||||||||||||| |||  |  |||||  |||||||||||||||||||||||| |||        ||||||  ||||||| ||||||||||||||    
T  25116306 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaaatgagcgtacgtgtgtgtagtccaacccttttcttgctcctg 25116405  T
Q  129 tgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    | ||||  ||||||| ||||  ||||||| |||||||||||||||||    
T  25116406 tataagatagatattgtgag-gaacaggtcctaaccttaacactaaa 25116451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 25175397 - 25175542
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtga--------gtgtgtgctccaacctttttcttgctcctg 128  Q
    |||||||||||||||||| |||  |  |||||  |||||||||||||||||||||||| |||        ||||||  ||||||| ||||||||||||||    
T  25175397 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaaatgagcgtacgtgtgtgtagtccaacccttttcttgctcctg 25175496  T
Q  129 tgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    | ||||  ||||||| ||||  ||||||| |||||||||||||||||    
T  25175497 tataagatagatattgtgag-gaacaggtcctaaccttaacactaaa 25175542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 22855644 - 22855576
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg 105  Q
    |||||||||||||||||| |||  |  | |||  |||||||||||||||||||||||||||||||||||    
T  22855644 actaatcacaacttcaagtattccttgtaaacttattcaacccaacaacaagtcttaagtgagtgtgtg 22855576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 27270111 - 27270044
Alignment:
Q  113 ctttttcttgctcctgtgtaagagatattatga-gaaaacaggttctaaccttaacactaaaccaacc 179  Q
    |||||| |||| ||||||||||||||||||||| |||||||||||||||| | |||| |||| |||||    
T  27270111 ctttttattgcacctgtgtaagagatattatgaggaaaacaggttctaacttcaacagtaaatcaacc 27270044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 27270256 - 27270189
Alignment:
Q  113 ctttttcttgctcctgtgtaagagatattatga-gaaaacaggttctaaccttaacactaaaccaacc 179  Q
    |||||| |||| ||||||||||||||||||||| |||||||||||||||| | |||| |||| |||||    
T  27270256 ctttttattgcacctgtgtaagagatattatgaggaaaacaggttctaacttcaacagtaaatcaacc 27270189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 20916625 - 20916691
Alignment:
Q  71 attcaacccaacaa-caagtcttaagtgagtgtgtgc-tccaacctttttcttgctcctgtgtaaga 135  Q
    |||||||||||||| ||||| | |||||||||||||| ||||||| ||||||||||||||| |||||    
T  20916625 attcaacccaacaatcaagtttcaagtgagtgtgtgcgtccaacccttttcttgctcctgtataaga 20916691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 24219834 - 24219674
Alignment:
Q  29 aagcgtaaactaatcacaacttcaagcatttttcatgaacca-attcaacccaacaa-caagtcttaagtgagtgtgtgc------tccaacctttttct 120  Q
    ||||||| |||||||||||  |||||||||| |  | ||||  |||||||||||||| ||||| | |||||||||||||       ||||||| ||||||    
T  24219834 aagcgtacactaatcacaaactcaagcatttcttgtaaaccttattcaacccaacaatcaagtttcaagtgagtgtgtgtgtgtagtccaacccttttct 24219735  T
Q  121 tgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||||| |||||  ||||||||||| ||||| ||||||| | ||  ||||||||||||    
T  24219734 tgctcctgtataagatagatattatgaggaaacatgttctaatcctagtactaaaccaacc 24219674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 20445052 - 20445119
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||||| ||||||||||||||| ||||  |||||||||||| ||  ||||||||||||||||||||||    
T  20445052 tccaacccttttcttgctcctgtataaggtagatattatgaggaag-aggttctaaccttaacactaaa 20445119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 27270401 - 27270352
Alignment:
Q  113 ctttttcttgctcctgtgtaagagatattatga-gaaaacaggttctaac 161  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  27270401 ctttttattgcgcctgtgtaagagatattatgaggaaaacaggttctaac 27270352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 20575520 - 20575433
Alignment:
Q  94 agtgagtgtgtgctccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    |||| ||||||  ||||||| |||||||| |||||| |||||  ||||||||||| ||||| ||||||| | || |||||||||||||    
T  20575520 agtgcgtgtgtagtccaacccttttcttgttcctgtataagatagatattatgaggaaacaagttctaatcctagcactaaaccaacc 20575433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 22948505 - 22948442
Alignment:
Q  116 tttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaa 177  Q
    |||||||||||||| |||||  ||||||||||| ||||||||||||| | || |||||||||||    
T  22948505 tttcttgctcctgtataagatagatattatgaggaaacaggttctaatcctagcactaaaccaa 22948442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 23600763 - 23600904
Alignment:
Q  29 aagcgtaaactaatcacaacttcaagcatttttcatgaacca-attcaacccaacaa-caagtcttaagtgagtgtgtgc------tccaacctttttct 120  Q
    ||||||| |||||||||||  |||||||||| |  | ||||  |||||||||||||| ||||| | |||||||||||||       ||||||| ||||||    
T  23600763 aagcgtacactaatcacaaactcaagcatttcttgtaaaccttattcaacccaacaatcaagtttcaagtgagtgtgtgtgtgtagtccaacccttttct 23600862  T
Q  121 tgctcctgtgtaag--agatattatgagaaaacaggttctaa 160  Q
    ||||||||| ||||  |||||||||||| ||||| |||||||    
T  23600863 tgctcctgtataagatagatattatgaggaaacatgttctaa 23600904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 22855562 - 22855495
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||||| ||||||||||||||| ||||  ||||||||||||  || |||| |||||||||||||||||    
T  22855562 tccaacccttttcttgctcctgtataagatagatattatgag-gaataggtcctaaccttaacactaaa 22855495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 224
Target Start/End: Original strand, 83285 - 83486
Alignment:
Q  29 aagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttg 122  Q
    ||||||| |||||||||||| |||||||||| ||| || |  |||||||||||||||||||||| |||||||||||        ||| || |||| ||||    
T  83285 aagcgtacactaatcacaacctcaagcatttctcacgagcttattcaacccaacaacaagtctttagtgagtgtgtctgtgtagtcctac-ttttgcttg 83383  T
Q  123 ctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaaccnnnnnnngttcttt-ttcatttcatataaagaatgtgggaatt 221  Q
    |||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||       ||||||| |||||||||||||||||| |||| ||||    
T  83384 ctcctgtgtaagagatctaatgaggaaacatgttctaaccttaacactaaaccaaccgagaaaagttctttcttcatttcatataaagaaggtggaaatt 83483  T
Q  222 ctt 224  Q
    |||    
T  83484 ctt 83486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 177
Target Start/End: Original strand, 4461378 - 4461527
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaa-ccaattcaacccaacaacaagtcttaagtgagtgtgtg--------ctccaacctttttcttgctcct 127  Q
    |||||||||| |||||||||||| ||||||| || ||||||||||||||||||||| |||||||||||||         |||| || |||||||||||||    
T  4461378 actaatcacatcttcaagcatttctcatgaaacctattcaacccaacaacaagtctcaagtgagtgtgtgtgtgtgtagtccagcccttttcttgctcct 4461477  T
Q  128 gtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaa 177  Q
    || |||||||||||||||| ||||||||||||| ||| ||| ||||||||    
T  4461478 gtataagagatattatgaggaaacaggttctaatcttgacattaaaccaa 4461527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 5397198 - 5397053
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg--------ctccaacctttttcttgctcctg 128  Q
    |||||||||||||||||| |||  |  |||||  |||||||||||||||||||||||||||||||||||         ||||||| ||||||||||||||    
T  5397198 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaagtgagtgtgtgtgtgtgtagtccaacccttttcttgctcctg 5397099  T
Q  129 tgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    | ||||  ||||||||||||  |||| ||||||||||||||||||||    
T  5397098 tataagatagatattatgag-gaacatgttctaaccttaacactaaa 5397053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 27291423 - 27291273
Alignment:
Q  32 cgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgc 123  Q
    |||| |||||||||||||||||| ||| ||  | |||  ||||||||||||||||| |||||||||||||| ||         ||||||| |||||||||    
T  27291423 cgtacactaatcacaacttcaagtattctttgtaaacttattcaacccaacaacaaatcttaagtgagtgtatgtgtgtgtagtccaacccttttcttgc 27291324  T
Q  124 tcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||||| |||||  ||||||||||| || |||||||||||||||||||||||    
T  27291323 tcctgtataagatagatattatgaggaa-caggttctaaccttaacactaaa 27291273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 825706 - 825561
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg--------ctccaacctttttcttgctcctg 128  Q
    |||||||||||||||||| |||  |  |||||  |||||||||||||||||||||||||||||||||||         | ||||| ||||||||||||||    
T  825706 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaagtgagtgtgtgtgtgtgtagttcaacccttttcttgctcctg 825607  T
Q  129 tgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    | ||||  ||||||||||||  |||| ||||||||||||||||||||    
T  825606 tataagatagatattatgag-gaacatgttctaaccttaacactaaa 825561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 14221856 - 14221995
Alignment:
Q  41 atcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtgtaag 134  Q
    |||||||||||||| |||  |  | |||| |||||||||||||| |||||| |||||||||||||       ||||||| ||||||||||||||| ||||    
T  14221856 atcacaacttcaagtattccttgtaaacctattcaacccaacaagaagtctcaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgtataag 14221955  T
Q  135 a--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |  ||||||||||| || |||||||||||||||||||||||    
T  14221956 atagatattatgaggaa-caggttctaaccttaacactaaa 14221995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 15065851 - 15065708
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtg 130  Q
    ||||||||||||||||||||||  |  | |||  ||||||||| ||||||| ||| |||||||||||||       ||||||| |||||||||||||||     
T  15065851 actaatcacaacttcaagcattccttgtaaacttattcaacccgacaacaaatctcaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgta 15065752  T
Q  131 taaga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||||  ||||||||||| || |||||||||||||||||||||||    
T  15065751 taagatagatattatgaggaa-caggttctaaccttaacactaaa 15065708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 4312560 - 4312486
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| |||||| |||||||| |||||  ||||||||||| ||||||||||||||||||| ||||||||||||    
T  4312560 tccaacccttttctagctcctgtataagatagatattatgaggaaacaggttctaaccttaagactaaaccaacc 4312486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 15206718 - 15206861
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtg 130  Q
    |||||| ||||||||||| |||  |  |||||  |||||||||||||||||||||||| ||||||||||       ||||||| |||||||||||||||     
T  15206718 actaattacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaaatgagtgtgtgtgtgtagtccaacccttttcttgctcctgta 15206817  T
Q  131 taag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||  ||||||||||||  |||| |||||| |||||||||||||    
T  15206818 taagatagatattatgag-gaacaagttctagccttaacactaaa 15206861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 15348408 - 15348344
Alignment:
Q  114 tttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaac 178  Q
    |||||||||  |||||||||||||||||||||| ||| |||||||||||||||  ||||||||||    
T  15348408 tttttcttgtgcctgtgtaagagatattatgaggaaataggttctaaccttaattctaaaccaac 15348344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 15916909 - 15916977
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg 105  Q
    |||||||||||||||||| |||  |  |||||  |||||||||||||||||||||||||||||||||||    
T  15916909 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaagtgagtgtgtg 15916977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 4791543 - 4791657
Alignment:
Q  64 tgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc----tccaacctttttcttgctcctgtgtaagagatat--tatgagaaaacaggttc 157  Q
    |||||| ||||||||||||||||||||| ||| |||||||||     ||||||| ||||||||||||| | ||||| ||||  |||||| || || ||||    
T  4791543 tgaacctattcaacccaacaacaagtctcaagcgagtgtgtgtgtagtccaacccttttcttgctcctatataagacatatattatgaggaa-catgttc 4791641  T
Q  158 taaccttaacactaaa 173  Q
    ||||||||||||||||    
T  4791642 taaccttaacactaaa 4791657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 6713173 - 6713256
Alignment:
Q  6 tgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagt 89  Q
    ||||| ||| ||||| ||||| | |||||| ||||||||||| |||||| |||| | ||||||| |||||||||||||| ||||    
T  6713173 tgtctactctaaggctttgttttcagcgtatactaatcacaaattcaagtatttcttatgaacctattcaacccaacaagaagt 6713256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 18287684 - 18287541
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtg 130  Q
    ||||||||||||||||||||||  |  | |||  ||||||||| ||||||| | | |||||||||| ||       ||||||| |||||||| ||||||     
T  18287684 actaatcacaacttcaagcattccttgtaaacttattcaacccgacaacaaatttcaagtgagtgtctgtgtgtagtccaacccttttcttgttcctgta 18287585  T
Q  131 taaga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||||  ||||||||||| || |||||||||||||||||||||||    
T  18287584 taagatagatattatgaggaa-caggttctaaccttaacactaaa 18287541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 6713278 - 6713319
Alignment:
Q  138 tattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  6713278 tattatgaggaaacatgttctaaccttaacactaaaccaacc 6713319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 20108369 - 20108295
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||||||||| |||||  ||||||||||| ||||| ||||||  | || |||||||||||||    
T  20108369 tccaacccttttcttgctcctgtataagatagatattatgaggaaacatgttctactcctagcactaaaccaacc 20108295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 48801988 - 48802062
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||||||||| ||| |  ||||||||||| ||||| ||||||| ||||  ||||||||||||    
T  48801988 tccaacccttttcttgctcctgtataatatagatattatgaggaaacaagttctaatcttagtactaaaccaacc 48802062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 15916991 - 15917058
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaagaga--tattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||||| ||||||||||||||| ||||| |  |||||||||  ||| |||||||||||||||||||||    
T  15916991 tccaacccttttcttgctcctgtataagatatgtattatgag-gaacgggttctaaccttaacactaaa 15917058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 12549002 - 12549089
Alignment:
Q  94 agtgagtgtgtgctccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    |||| ||||||  ||||||| ||||||||||| ||| |||||  ||||||||||| ||||| ||||||| | ||  ||||||||||||    
T  12549002 agtgtgtgtgtagtccaacccttttcttgctcatgtataagatagatattatgaggaaacatgttctaatcctagtactaaaccaacc 12549089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 1144 - 964
Alignment:
Q  6 tgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg 105  Q
    ||||||| |||| || ||||| | |||||| ||||||||||| |||||| ||||  |||||| | ||||||||||||||||||| | |||||||||||||    
T  1144 tgtctcccccaacgctttgttttcagcgtacactaatcacaatttcaagtatttcacatgaatctattcaacccaacaacaagtttcaagtgagtgtgtg 1045  T
Q  106 c--------tccaacctttttcttgctcctgtgtaagagatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
             |||| | |||||||||||| ||| |||||||||||||||| || |||||||||||||||||| ||||||||||    
T  1044 tgtgtgtagtccagc-tttttcttgctcttgtttaagagatattatgaggaatcaggttctaaccttaacaataaaccaacc 964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 9488977 - 9489081
Alignment:
Q  1 actcatgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagt 100  Q
    |||||||||||||||| ||| ||||||||   ||| ||||| |||||||||||| |||| ||||||||| ||||||||||||||||||||| ||||||||    
T  9488977 actcatgtctcctccagggctttgttctagtggtacactaaacacaacttcaagtatttctcatgaacctattcaacccaacaacaagtctcaagtgagt 9489076  T
Q  101 gtgtg 105  Q
    |||||    
T  9489077 gtgtg 9489081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 12515145 - 12515046
Alignment:
Q  6 tgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg 105  Q
    ||||||||||||||| ||||| | |||||| |||| ||||||||||||| |||| ||||||||| ||||||||||||||||||| | |||||||||||||    
T  12515145 tgtctcctccaaggctttgttttcagcgtacactagtcacaacttcaagtatttctcatgaacctattcaacccaacaacaagtttcaagtgagtgtgtg 12515046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 15865570 - 15865427
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtga------gtgtgtgctccaacctttttcttgctcctgtg 130  Q
    |||||||||||||||||| |||  |  |||||  ||||||||||||||||||||||||||||      ||||||  ||||||| |||||||||||||||     
T  15865570 actaatcacaacttcaagtattccttgtgaactcattcaacccaacaacaagtcttaagtgaatgtgtgtgtgtagtccaacccttttcttgctcctgta 15865471  T
Q  131 taag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||  ||||||||||| | |||||||||||||| ||||||||||    
T  15865470 taagatagatattatga-agaacaggttctaaccctaacactaaa 15865427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 17485037 - 17485195
Alignment:
Q  29 aagcgtaaactaatcacaacttcaagcatttttcatgaacca-attcaacccaacaa-caagtcttaagtgagtgtgtgc----tccaacctttttcttg 122  Q
    ||||||| |||||||||||  |||||||||| | || | ||  |||||||||||||| ||||| | |||||||||||||     ||||||| ||||||||    
T  17485037 aagcgtacactaatcacaaactcaagcatttcttataatccttattcaacccaacaatcaagtttcaagtgagtgtgtgtgtagtccaacccttttcttg 17485136  T
Q  123 ctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| |||||  ||||||||||| |||||||||||||||||||  |||||||||||    
T  17485137 ctcctgtataagatagatattatgaggaaacaggttctaaccttaagcctaaaccaacc 17485195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 14654131 - 14654273
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg------ctccaa-cctttttcttgctcctgt 129  Q
    |||||||||||||||||| |||  |  |||||  |||||||||||||||||||||||||||||||||||       ||||| || |||||||||||||||    
T  14654131 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaagtgagtgtgtgtgtgtagtccaaccccttttcttgctcctgt 14654230  T
Q  130 gtaag--agatattatgagaaaacaggttctaaccttaacacta 171  Q
     ||||  ||||||||||||  |||||||||||||||||||||||    
T  14654231 ataagatagatattatgag-gaacaggttctaaccttaacacta 14654273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 10650475 - 10650325
Alignment:
Q  32 cgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtga--------gtgtgtgctccaacctttttcttgc 123  Q
    |||| |||||||||||||||||| ||| ||  | |||  ||||||||||||||||| ||||||||||        ||||||  ||||||| |||||||||    
T  10650475 cgtacactaatcacaacttcaagtattctttgtaaacttattcaacccaacaacaaatcttaagtgagtgtatgtgtgtgtagtccaacccttttcttgc 10650376  T
Q  124 tcctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||||| ||||  ||||||||||||  |||||||||||||| ||||||||||    
T  10650375 tcctgtataagatagatattatgag-gaacaggttctaaccataacactaaa 10650325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 15260242 - 15260385
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtg 130  Q
    ||||||||||||||||||||||  |  | |||  ||||||||| ||||||| | | |||||||||||||       ||||||| |||||||||||||||     
T  15260242 actaatcacaacttcaagcattccttgtaaacttattcaacccgacaacaaatttcaagtgagtgtgtgtgggtagtccaacccttttcttgctcctgta 15260341  T
Q  131 taaga--gatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    |||||  ||||||||||| || |||||||||||||||||||||||    
T  15260342 taagatagatattatgaggaa-caggttctaaccttaacactaaa 15260385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 15409452 - 15409309
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtg 130  Q
    ||||||||| |||||||| |||  |  |||||||||||||||||||||||||| | |||||||||||||       ||||||| |||||| ||||||||     
T  15409452 actaatcacgacttcaagtattcgttgtgaaccaattcaacccaacaacaagtttcaagtgagtgtgtgtgtgtagtccaacccttttctcgctcctgta 15409353  T
Q  131 taag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||  | ||||||||||  |||| ||||||||||||||||||||    
T  15409352 taagacatatattatgag-gaacatgttctaaccttaacactaaa 15409309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 10630839 - 10630681
Alignment:
Q  29 aagcgtaaactaatcacaacttcaagcatttttcatgaacca-attcaacccaacaa-caagtcttaagtgagtgtgtgc----tccaacctttttcttg 122  Q
    ||||||| |||||||||||  |||||||||| |  | ||||  |||||||||||||| ||||| | |||||||||||||     ||||||| ||||||||    
T  10630839 aagcgtacactaatcacaaactcaagcatttcttgtaaaccttattcaacccaacaatcaagtttcaagtgagtgtgtgtgtagtccaacccttttcttg 10630740  T
Q  123 ctcctgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||  |||||||||||| ||||| ||||||| | ||  ||||||||||||    
T  10630739 ctcctgtataagatagatattatgaggaaacatgttctaatcctagtactaaaccaacc 10630681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 18081631 - 18081747
Alignment:
Q  72 ttcaacccaacaa-caagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaacc 162  Q
    ||||||||||||| |||||||||||||||||||||       ||||||| ||||||||||||||| ||||  |||||||||||| ||||| ||||||| |    
T  18081631 ttcaacccaacaatcaagtcttaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgaggaaacatgttctaatc 18081730  T
Q  163 ttaacactaaaccaacc 179  Q
     ||  ||||||||||||    
T  18081731 ctagtactaaaccaacc 18081747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 16682834 - 16682687
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg----------ctccaacctttttcttgctcc 126  Q
    |||||||||||||||||| |||  |  | |||  |||||||| ||||||||||||||||||||||||||           ||||||| ||||||||||||    
T  16682834 actaatcacaacttcaagtattccttgtaaacttattcaaccaaacaacaagtcttaagtgagtgtgtgtgtgtgtgtagtccaacccttttcttgctcc 16682735  T
Q  127 tgtgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||| ||||  ||||||||||||  || ||||||||||| ||||||||||    
T  16682734 tgtataagatagatattatgag-gaataggttctaaccgtaacactaaa 16682687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 8092598 - 8092684
Alignment:
Q  71 attcaacccaacaa-caagtcttaagtgagtgtgtgc--tccaacctttttcttgctcctgtgtaag--agatattatgagaaaaca 152  Q
    |||||||||||||| |||||  ||||||||||||||   ||||||| ||||||||||||||| ||||  |||||||||||| |||||    
T  8092598 attcaacccaacaatcaagttctaagtgagtgtgtgtaatccaacccttttcttgctcctgtataagatagatattatgaggaaaca 8092684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 3354640 - 3354566
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||||||||| |||||  |||||||||||||||||  |||||| | ||  ||||||||||||    
T  3354640 tccaacccttttcttgctcctgtataagatagatattatgagaaaacatcttctaatcctagtactaaaccaacc 3354566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 5766 - 5865
Alignment:
Q  6 tgtctcctccaaggcattgttctaagcgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg 105  Q
    ||||||||||||||| ||||| | |||||| |||| ||||||||||||| |||| ||||||||| ||||||||||||||||||| | |||||||||||||    
T  5766 tgtctcctccaaggctttgttttcagcgtacactagtcacaacttcaagtatttctcatgaacctattcaacccaacaacaagtttcaagtgagtgtgtg 5865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 5882 - 5926
Alignment:
Q  113 ctttttcttgctcctgtgtaagagatattatgagaaaacaggttc 157  Q
    ||||||||||||  |||||||||||||||||||| ||||| ||||    
T  5882 ctttttcttgcttatgtgtaagagatattatgaggaaacatgttc 5926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 50639 - 50782
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtg 130  Q
    |||||||||||||||||| |||  |  |||||  |||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||     
T  50639 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgta 50738  T
Q  131 taag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||  ||||||||||||  || ||||||||||||||||||||||    
T  50739 taagatagatattatgag-gaagaggttctaaccttaacactaaa 50782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 172181 - 172040
Alignment:
Q  39 taatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgctcctgtg 130  Q
    |||||| |||||||||||||  | ||||||| ||||||||||||||||| ||| |||||||||||||         |||| || ||||||||||||||||    
T  172181 taatcataacttcaagcattccttatgaacctattcaacccaacaacaactctcaagtgagtgtgtgtgtgtgtagtccagcccttttcttgctcctgtg 172082  T
Q  131 taagagatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||||||||||||||  || |||||||||||||| |||||||    
T  172081 taagagatattatgag-gaataggttctaaccttatcactaaa 172040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 161926 - 161783
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtg 130  Q
    ||||||||||| |||||| |||  |  |||||| ||||||||||||||||||||| |||| ||||||||       ||||||| |||||||||||||||     
T  161926 actaatcacaatttcaagtattccttgtgaacctattcaacccaacaacaagtctcaagtaagtgtgtgtgtgtagtccaacccttttcttgctcctgta 161827  T
Q  131 taag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||  | ||||||||||  ||||  |||||||||||||||||||    
T  161826 taagacatatattatgag-gaacatattctaaccttaacactaaa 161783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 25625 - 25736
Alignment:
Q  71 attcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaa 160  Q
    |||||||||||||||||||||||||||||||||||         ||||||| ||||||||||||||| |||||  ||||||||||| || ||||||||||    
T  25625 attcaacccaacaacaagtcttaagtgagtgtgtgtgtatgtagtccaacccttttcttgctcctgtataagatagatattatgaggaa-caggttctaa 25723  T
Q  161 ccttaacactaaa 173  Q
    |||||||||||||    
T  25724 ccttaacactaaa 25736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 30569 - 30427
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtg 130  Q
    |||||||||||||||||||||| ||  | |||   |||||||||||||||| |||||||||||||| ||       ||||||| |||||||||||||||     
T  30569 actaatcacaacttcaagcattctttgtaaactttttcaacccaacaacaaatcttaagtgagtgtttgtgtttagtccaacccttttcttgctcctgta 30470  T
Q  131 taag--agatattatgagaaaacaggttctaaccttaacactaa 172  Q
    ||||  ||||||||||||  || |||||||||||||||||||||    
T  30469 taagatagatattatgag-gaataggttctaaccttaacactaa 30427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 22288 - 22405
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtg 130  Q
    |||||||||||||||||| ||| ||  | |||  |||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||     
T  22288 actaatcacaacttcaagtattctttgtaaacttattcaacccaacaacaagtcttaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgta 22387  T
Q  131 taag--agatattatgag 146  Q
    ||||  ||||||||||||    
T  22388 taagatagatattatgag 22405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 841 - 696
Alignment:
Q  33 gtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc----tccaacctttttcttgctcctg 128  Q
    |||||||||||||||||||||| |||  |  |||||  ||||||| ||| |||||||||||||||||||||||     || |||| ||||||||||||||    
T  841 gtaaactaatcacaacttcaagtattccttgtgaacttattcaactcaaaaacaagtcttaagtgagtgtgtgtgtagtcgaacccttttcttgctcctg 742  T
Q  129 tgtaag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    | ||||  ||||||||||||  |||| |||||| |||||| ||||||    
T  741 tataagatagatattatgag-gaacatgttctatccttaatactaaa 696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 37764 - 37650
Alignment:
Q  65 gaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc----tccaacctttttcttgctcctgtgtaagagatat--tatgagaaaacaggttct 158  Q
    ||||| ||||||||||||||||||| | |||||||||||||     | ||||| ||||||||| | ||| ||||| ||||  |||||| |||||||||||    
T  37764 gaacctattcaacccaacaacaagtttcaagtgagtgtgtgtgaagtgcaacccttttcttgcgcatgtataagatatatattatgaggaaacaggttct 37665  T
Q  159 aaccttaacactaaa 173  Q
    |||||||||||||||    
T  37664 aaccttaacactaaa 37650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 2650 - 2539
Alignment:
Q  71 attcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaa 160  Q
    |||||||||||||||| ||||||||||||||||||         ||||||| ||||||||||||||| |||||  ||||||||||| ||  |||||||||    
T  2650 attcaacccaacaacatgtcttaagtgagtgtgtgtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgaggaag-aggttctaa 2552  T
Q  161 ccttaacactaaa 173  Q
    |||||||||||||    
T  2551 ccttaacactaaa 2539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 54986 - 55129
Alignment:
Q  39 taatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc--------tccaacctttttcttgctcctgtg 130  Q
    |||||||||||||||| |||  |  |||||  ||||||||||||||||||| |||||||||||| ||         ||||||| |||||||||||||||     
T  54986 taatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagttttaagtgagtgtatgtgtgtgtagtccaacccttttcttgctcctgta 55085  T
Q  131 taag--agatattatgagaaaacaggttctaaccttaacactaaa 173  Q
    ||||  ||||||||||||  |||| ||||||||||||||||||||    
T  55086 taagatagatattatgag-gaacaagttctaaccttaacactaaa 55129  T

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Target: scaffold0056 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 42167 - 42099
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg 105  Q
    |||||||||||||||||| |||  |  |||||  |||||||||||||||||||||||||||||||||||    
T  42167 actaatcacaacttcaagtattccttgtgaacttattcaacccaacaacaagtcttaagtgagtgtgtg 42099  T

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Target: scaffold0375 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 12632 - 12516
Alignment:
Q  64 tgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggt 155  Q
    |||||| ||||||| ||||||||||||| |||||||||||||       ||||||| ||||||||||||||| ||||  | ||||||||||  |||| ||    
T  12632 tgaacctattcaactcaacaacaagtctcaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgtataagacatatattatgag-gaacatgt 12534  T
Q  156 tctaaccttaacactaaa 173  Q
    ||||||||||||||||||    
T  12533 tctaaccttaacactaaa 12516  T

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Target: scaffold0031 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 22659 - 22543
Alignment:
Q  64 tgaaccaattcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtgtaagagatat--tatgagaaaacaggt 155  Q
    |||||| |||||||||||||| |||||| ||||||||||||        ||||||| ||||||||||||||| ||||| ||||  |||||| || |||||    
T  22659 tgaacctattcaacccaacaataagtctcaagtgagtgtgtttgtgtagtccaacccttttcttgctcctgtataagacatatattatgaggaa-caggt 22561  T
Q  156 tctaaccttaacactaaa 173  Q
    ||||||||||||||||||    
T  22560 tctaaccttaacactaaa 22543  T

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Target: scaffold0278 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 13216 - 13289
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaac 178  Q
    ||||||| ||||||||||||||| |||||  ||||||||||| ||||||||||||| | || ||||||||||||    
T  13216 tccaacccttttcttgctcctgtataagatagatattatgaggaaacaggttctaatcctagcactaaaccaac 13289  T

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Target: scaffold0512 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 5162 - 5094
Alignment:
Q  37 actaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg 105  Q
    |||||||||||||||||| |||  |  |||||| |||||||||||||| |||||| |||||||||||||    
T  5162 actaatcacaacttcaagtattccttgtgaacctattcaacccaacaataagtctcaagtgagtgtgtg 5094  T

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Target: scaffold0384 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 10608 - 10499
Alignment:
Q  71 attcaacccaacaacaagtcttaagtgagtgtgtgc------tccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaacc 162  Q
    ||||||||||||||||| ||| |||||||||||||       ||||||| ||||||||||||||| ||||  ||||||||||||  |||||||||||| |    
T  10608 attcaacccaacaacaaatctcaagtgagtgtgtgtgtgtagtccaacccttttcttgctcctgtataagatagatattatgag-gaacaggttctaatc 10510  T
Q  163 ttaacactaaa 173  Q
    || ||||||||    
T  10509 ttgacactaaa 10499  T

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Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 12439 - 12367
Alignment:
Q  109 caacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||| ||||||||||||||| |||||  ||||||||||| ||||||||||||| | ||  ||||||||||||    
T  12439 caacccttttcttgctcctgtataagatagatattatgaggaaacaggttctaatcctaggactaaaccaacc 12367  T

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Target: scaffold0037 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 72700 - 72773
Alignment:
Q  32 cgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg 105  Q
    |||| |||||||||||||||| | |||  |  |||||| ||||||||||||||||| |||| ||||||||||||    
T  72700 cgtacactaatcacaacttcatgtattccttgtgaacctattcaacccaacaacaaatcttgagtgagtgtgtg 72773  T

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Target: scaffold0037; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 84890 - 84963
Alignment:
Q  32 cgtaaactaatcacaacttcaagcatttttcatgaaccaattcaacccaacaacaagtcttaagtgagtgtgtg 105  Q
    |||| |||||||||||||||| | |||  |  |||||| ||||||||||||||||| |||| ||||||||||||    
T  84890 cgtacactaatcacaacttcatgtattccttgtgaacctattcaacccaacaacaaatcttgagtgagtgtgtg 84963  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 232959 - 233031
Alignment:
Q  109 caacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||| ||||||||||||||| |||||  ||||||||||| ||||||||||||| | ||  ||||||||||||    
T  232959 caacccttttcttgctcctgtataagatagatattatgaggaaacaggttctaatcctaggactaaaccaacc 233031  T

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Target: scaffold0116 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 37911 - 38020
Alignment:
Q  71 attcaacccaacaacaagtcttaagtgagtgtgtg------ctccaacctttttcttgctcctgtgtaag--agatattatgagaaaacaggttctaacc 162  Q
    ||||||||||||| |||||||||||||||||||||       |||| || ||||||||||||| | ||||  |||||||||||| ||| ||||| || ||    
T  37911 attcaacccaacatcaagtcttaagtgagtgtgtgtgtatagtccagcccttttcttgctcctttataagatagatattatgaggaaa-aggttttatcc 38009  T
Q  163 ttaacactaaa 173  Q
    |||||||||||    
T  38010 ttaacactaaa 38020  T

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Target: scaffold0029 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 123372 - 123298
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaagaga--tattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||||||||| ||||| |  ||||||||| ||||| | ||||||| || |||||||||||||    
T  123372 tccaacccttttcttgctcctgtataagataggtattatgaggaaacatggtctaaccctagcactaaaccaacc 123298  T

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Target: scaffold0026 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 11052 - 10978
Alignment:
Q  107 tccaacctttttcttgctcctgtgtaaga--gatattatgagaaaacaggttctaaccttaacactaaaccaacc 179  Q
    ||||||| ||||||||||||||| |||||  ||||||||||| | ||| ||||||| ||||  ||||||||||||    
T  11052 tccaacccttttcttgctcctgtataagatagatattatgaggatacatgttctaatcttagtactaaaccaacc 10978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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