View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10170_low_26 (Length: 229)
Name: NF10170_low_26
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10170_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 21962760 - 21962565
Alignment:
| Q |
14 |
gatgaaggcagggtgatgaaacagaatccatttgggacagaaaagagaaacacatgcagacacnnnnnnnnnnnnnnnnggtaaactaagtaaaagctat |
113 |
Q |
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| T |
21962760 |
gatgaaggcagggtgataaaacagaatccatttgggacagaaaagagaaacacatgcagacacaaaaaaaaaat-----ggtaaactaagtaaaagctat |
21962666 |
T |
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| Q |
114 |
gttaggaaacttcgtatatatgcataaaaatattcagtggtattttccacacaattggctttatcatcatcttatcagcatatgaaacattacgtgagaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21962665 |
gttaggaaacttcgtatatatgcataaaaatattcagtggtattttccacacaattggctttatcatcatcttatcagcatatgaaacattacgtgagaa |
21962566 |
T |
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