View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10170_low_3 (Length: 429)
Name: NF10170_low_3
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10170_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34573099 - 34573320
Alignment:
| Q |
1 |
ttacagaaagcatgatttatatgcacctacatgtaacaactatcacatcctaaggtaataaatataacaaactatcaagtaattgtaactaccttaaaca |
100 |
Q |
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| T |
34573099 |
ttacagaaagcatgatttatatgcacctacatgtaacaactatcacatcctaaggtaataaatataacaaactatcaagtaattgtaactaccttaaaca |
34573198 |
T |
|
| Q |
101 |
atattcaactaattctgaaaaatctattttataacaaactcaagatttggacacattatgttacgctaattagcaagtattactctgcatatagatcaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34573199 |
atattcaactaattctgaaaaatctattttataacaaactcaagatttggacacattatgttacgctaattagcaagtattactctgcatatagttcaag |
34573298 |
T |
|
| Q |
201 |
gtgtatgctattgaaacactac |
222 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
34573299 |
ttgtatgctattgaaacactac |
34573320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 236 - 410
Target Start/End: Original strand, 34573343 - 34573517
Alignment:
| Q |
236 |
ctaggagccactcaacgttgaaataatgctatctagcaaagtttcatcattctacaatttataatagggaaaataatcaacttttactagtatatgttct |
335 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34573343 |
ctaggagccactcaacgttgaaataatgctatctagcaaagtttcatcattctacaatttataatagggaaaataatcaacttttactagtatatgttct |
34573442 |
T |
|
| Q |
336 |
caatatgatgaaaacttgcccaggaagcatttataattcatgccgggtagctcactagcttgagtgaatggatta |
410 |
Q |
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| T |
34573443 |
caatatgatgaaaacttgcccaggaagcatttataattcatgccgggtagctcactagcttgagtgaatggatta |
34573517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 116
Target Start/End: Complemental strand, 2622063 - 2622032
Alignment:
| Q |
85 |
gtaactaccttaaacaatattcaactaattct |
116 |
Q |
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| T |
2622063 |
gtaactaccttaaacaatattcaactaattct |
2622032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 44565182 - 44565149
Alignment:
| Q |
83 |
ttgtaactaccttaaacaatattcaactaattct |
116 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
44565182 |
ttgtaactaccttaaataatattcaactaattct |
44565149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 45518928 - 45518960
Alignment:
| Q |
86 |
taactaccttaaacaatattcaactaattctga |
118 |
Q |
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| T |
45518928 |
taactaccttaaacattattcaactaattctga |
45518960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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