View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10170_low_4 (Length: 420)
Name: NF10170_low_4
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10170_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 55 - 327
Target Start/End: Original strand, 1423285 - 1423554
Alignment:
| Q |
55 |
aatagactgagaatgtgtatttatagtactatgctagtctatgtgaaactcatgtatatcatatatattgtatcttagccttttaattgcttcagatctt |
154 |
Q |
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| T |
1423285 |
aatacactgagaatgtgtatttatagtactatgctagtctatgtgaaactcatgcatatcatatatattgtatcttagccttttaattgcttcagatctt |
1423384 |
T |
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| Q |
155 |
cacctaaattttcttttaacactcttgcaaatgaaaaagagnnnnnnnnnngttaatccaagagagagaataataatttttgagatataaagagtgcaaa |
254 |
Q |
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| T |
1423385 |
cacctaaattttcttttaacactcttgcaaatgaaagagagaaaaaaaaa--ttaatccaagagagagaataataatttttgagatataaagagtgcaaa |
1423482 |
T |
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| Q |
255 |
aattgcatggcttaagagagaggagaccaaatgcataaggtactgcatgcaactctctgactgttttttagta |
327 |
Q |
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| T |
1423483 |
aattgcatggctt-agagagagaagaccaaatgcataagttactgcatgcaactctctgactgttttttagta |
1423554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 1416483 - 1416645
Alignment:
| Q |
17 |
aagaagtgaaaggttaaggtgtattgaatgaatgtaaaaatagactgagaatgtgtatttatagtactatgctagtctatgtgaaactcatgtatatcat |
116 |
Q |
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| T |
1416483 |
aagaagtaaaaggttatggtgtattgaatgaatgtaaacatacacagaaaatgtgtatttatagtactacgctagtctatgtgaacctcatgcatatcat |
1416582 |
T |
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| Q |
117 |
atatattgtatcttagcct---tttaattgcttcag----atcttcacctaaattttcttttaa |
173 |
Q |
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| T |
1416583 |
atgtattgtatct-agcctaattctaattgcttcagttttatcttcacctaaattttcttttaa |
1416645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 327
Target Start/End: Original strand, 1416702 - 1416809
Alignment:
| Q |
215 |
agagagagaataataatttttgagatataaagagtgcaaaaattgcatggcttaagagagaggagaccaaatgcataaggta---ctgcatgcaactctc |
311 |
Q |
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| T |
1416702 |
agagagagagtaataatttttgagagataa-gagtgcaaaaattggatg-------agagaggagaccaaatgcataaggtacttctgcatgcaactctc |
1416793 |
T |
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| Q |
312 |
tgactgttttttagta |
327 |
Q |
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| T |
1416794 |
tgattgttttttagta |
1416809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 1423593 - 1423640
Alignment:
| Q |
366 |
ctaagatcgtcctgaaaatgttacgtaaaatattagttgagatgttgtctgt |
417 |
Q |
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| T |
1423593 |
ctaagatcgtcctgaaaatgtta----aaatattagttgagatgttgtctgt |
1423640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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