View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10170_low_5 (Length: 415)

Name: NF10170_low_5
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10170_low_5
NF10170_low_5
[»] chr3 (2 HSPs)
chr3 (1-398)||(53567164-53567561)
chr3 (36-167)||(52736137-52736268)
[»] chr7 (4 HSPs)
chr7 (64-280)||(37149105-37149321)
chr7 (10-221)||(4227810-4228019)
chr7 (37-280)||(38493553-38493796)
chr7 (61-180)||(16066371-16066489)
[»] chr2 (5 HSPs)
chr2 (64-280)||(37532320-37532536)
chr2 (18-221)||(42771215-42771416)
chr2 (54-221)||(26806877-26807044)
chr2 (18-86)||(11006292-11006358)
chr2 (117-169)||(11006505-11006557)
[»] chr4 (2 HSPs)
chr4 (10-228)||(20231368-20231584)
chr4 (36-161)||(1594098-1594223)
[»] chr5 (3 HSPs)
chr5 (37-188)||(43153122-43153272)
chr5 (37-86)||(3748420-3748469)
chr5 (18-86)||(19204618-19204685)
[»] chr6 (1 HSPs)
chr6 (37-280)||(3606295-3606537)
[»] chr1 (1 HSPs)
chr1 (18-86)||(7765901-7765968)


Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 53567561 - 53567164
Alignment:
Q  1 atttcgaaggtaggtggagggatttgtccaatataaaaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaatcggtactatgtact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53567561 atttcgaaggtaggtggagggatttgtccaatataaaaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaatcggtactatgtact 53567462  T
Q  101 tccgtggttgagaaactcgatttcaagaagctaggaatagcagcttctctaagaatcaattctgaagatggaaacttacggcgtcggtagagtattggca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53567461 tccgtggttgagaaactcgatttcaagaagctaggaatagcagcttctctaagaatcaattctgaagatggaaacttacggcgtcggtagagtattggca 53567362  T
Q  201 gagaaccaaacatattgaaatcgcgtttcatgggaaggacgtacgtttgattgtttccaccgggtatccaaacatagacttaatggatgaaatcatattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53567361 gagaaccaaacatattgaaatcgcgtttcatgggaaggacgtacgtttgattgtttccaccgggtatccaaacatagacttaatggatgaaatcatattt 53567262  T
Q  301 tacattgcagtggttgttgaccatccaatgtatctgtgcgcaactggcccaccttttaaggtgaataagtggaatgttggagtacaagccatacatat 398  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53567261 tacattgcagtggttgttgaccatccaatgtatctgcgcgcaactggcccaccttttaaggtgaataagtggaatgttggagtacaagccatacatat 53567164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 52736268 - 52736137
Alignment:
Q  36 aaaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaatcggtactatgtacttccgtggttgagaaactcgatttcaagaagctagg 135  Q
    ||||||| || |||||  || |||||||| ||| ||| ||||||||||| | | |  |||||||||| | ||| || | | ||||||||||||||||||     
T  52736268 aaaaaggtatatgaaagaaactgatgagattcaggggtaaaagagacaattggatgatatgtacttctgcggtggaaagaatcgatttcaagaagctaga 52736169  T
Q  136 aatagcagcttctctaagaatcaattctgaag 167  Q
     | |||||||||| ||| |||| |||||||||    
T  52736168 gagagcagcttctttaaaaatcgattctgaag 52736137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 64 - 280
Target Start/End: Original strand, 37149105 - 37149321
Alignment:
Q  64 actcaagggcaaaagagacaaatcggtactatgtacttccgtggttgagaaactcgatttcaagaagctaggaatagcagcttctctaagaatcaattct 163  Q
    ||||||||||||||| ||||||||||||| |||||||| |  ||  ||||||||||||||| ||||||||||||||||||||||||||| |||||||| |    
T  37149105 actcaagggcaaaagcgacaaatcggtaccatgtactttcacggcagagaaactcgatttctagaagctaggaatagcagcttctctaaaaatcaatttt 37149204  T
Q  164 gaagatggaaacttacggcgtcggtagagtattggcagagaaccaaacatattgaaatcgcgtttcatgggaaggacgtacgtttgattgtttccaccgg 263  Q
    ||| |||||||| |||| || |||| |||| | ||| ||||||||||||| || ||| | ||||| ||||  || |||  | ||||||||||||||||||    
T  37149205 gaaaatggaaacgtacgacggcggtggagtgtcggcggagaaccaaacatgttaaaaccacgtttgatggacagaacgcgcttttgattgtttccaccgg 37149304  T
Q  264 gtatccaaacatagact 280  Q
    ||||||||||| |||||    
T  37149305 gtatccaaacacagact 37149321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 4228019 - 4227810
Alignment:
Q  10 gtaggtggagggatttgtccaatataaaaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaatcggtactatgtacttccgtggtt 109  Q
    |||| |||||||||||||| |||||||| | |  ||||||||  ||||||||||| ||||||| ||||||||||||| ||  |||||||||| |  |||     
T  4228019 gtagctggagggatttgtcaaatataaaca-gatatgtgaaaaaaagtgatgagattcaagggtaaaagagacaaat-ggggctatgtactttcacggta 4227922  T
Q  110 gagaaactcgatttcaagaagctaggaatagcagcttctctaagaatcaattctgaagatggaaacttacggcgtcggtagagtattggcagagaaccaa 209  Q
    | ||||||||||| ||| |||||||| | |||||||||| ||  |||| |||||||| | | |||||||||  | ||||| ||| ||||  || ||||||    
T  4227921 gggaaactcgattccaaaaagctagggaaagcagcttctgtacaaatcgattctgaaaacgcaaacttacgatggcggtatagtgttggtggataaccaa 4227822  T
Q  210 acatattgaaat 221  Q
    |||  |||||||    
T  4227821 acaccttgaaat 4227810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 280
Target Start/End: Complemental strand, 38493796 - 38493553
Alignment:
Q  37 aaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaatcggtactatgtacttccgtggttgagaaactcgatttcaagaagctagga 136  Q
    |||||| |||||||| |||||| ||||| ||||||| ||||||||||||| | | ||||||| ||||   |  |||| | ||||||| || | |||| ||    
T  38493796 aaaaggtatgtgaaaggaagtgttgagattcaagggtaaaagagacaaatggatcctatgtatttccacagcagagagaatcgatttgaaaaggctaaga 38493697  T
Q  137 atagcagcttctctaagaatcaattctgaagatggaaacttacggcgtcggtagagtattggcagagaaccaaacatattgaaatcgcgtttcatg-gga 235  Q
    | ||||||||| ||||||||| ||||||||||| |||||  ||| || ||| | ||| ||||  |||||||||||| ||  ||||| ||||| ||| ||     
T  38493696 agagcagcttcactaagaatcgattctgaagat-gaaacgcacgacggcggcacagtgttggtggagaaccaaacacatcaaaatcccgtttgatgaggt 38493598  T
Q  236 aggacgtacgtttgattgtttccaccgggtatccaaacatagact 280  Q
    ||||||  ||||||  ||||  ||||||| | |||||||||||||    
T  38493597 aggacgcgcgtttgggtgttgtcaccgggcaaccaaacatagact 38493553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 16066489 - 16066371
Alignment:
Q  61 gagactcaagggcaaaagagacaaatcggtactatgtacttccgtggttgagaaactcgatttcaagaagctaggaatagcagcttctctaagaatcaat 160  Q
    ||||||||||||||| | | |||||| |||| | ||| |||||  |||  ||| |||| ||||||||||||||||||| ||||||||| | | |||| ||    
T  16066489 gagactcaagggcaacataaacaaat-ggtattgtgtgcttcctcggtaaagagactcaatttcaagaagctaggaattgcagcttctttcataatcgat 16066391  T
Q  161 tctgaagatggaaacttacg 180  Q
    | |||| |||||||| ||||    
T  16066390 tttgaacatggaaacatacg 16066371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 64 - 280
Target Start/End: Original strand, 37532320 - 37532536
Alignment:
Q  64 actcaagggcaaaagagacaaatcggtactatgtacttccgtggttgagaaactcgatttcaagaagctaggaatagcagcttctctaagaatcaattct 163  Q
    ||||||| | ||||| ||||||||||||| |||||||| |  ||  |||||||| |||||| |||||||||||||||||| |||||||| |||  |||||    
T  37532320 actcaagcgaaaaagcgacaaatcggtaccatgtactttcacggcagagaaacttgatttctagaagctaggaatagcagtttctctaaaaatggattct 37532419  T
Q  164 gaagatggaaacttacggcgtcggtagagtattggcagagaaccaaacatattgaaatcgcgtttcatgggaaggacgtacgtttgattgtttccaccgg 263  Q
    ||| |||||||| ||||  | |||| |||| | ||| ||||||||||||| || ||| | ||||| ||||  || |||  | ||||||||||||||||||    
T  37532420 gaaaatggaaacgtacgatggcggtggagtgtcggccgagaaccaaacatgttaaaaccacgtttgatggacagaacgcgcttttgattgtttccaccgg 37532519  T
Q  264 gtatccaaacatagact 280  Q
    ||||||||||| |||||    
T  37532520 gtatccaaacacagact 37532536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 42771215 - 42771416
Alignment:
Q  18 agggatttgtccaatataaaaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaatcggtactatgtacttccgtggttgagaaact 117  Q
    ||||||||||| |||||||| | |  ||||||||  ||||||||||| ||||||| ||||||||||||| || ||||||||||| |  ||| | ||||||    
T  42771215 agggatttgtcaaatataaaca-gatatgtgaaaaaaagtgatgagattcaagggtaaaagagacaaat-gggactatgtactttcacggtagggaaact 42771312  T
Q  118 cgatttcaagaagctaggaatagcagcttctctaagaatcaattctgaagatggaaacttacggcgtcggtagagtattggcagagaaccaaacatattg 217  Q
     |||| ||| |||||||| | |||||||||| ||  | || |||||||| | | ||||||||  |  ||||| ||||||||  || |||||||||  |||    
T  42771313 agattccaaaaagctagggagagcagcttctatacaactcgattctgaaaacgcaaacttacaaccgcggtatagtattggtggataaccaaacaccttg 42771412  T
Q  218 aaat 221  Q
    ||||    
T  42771413 aaat 42771416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 26806877 - 26807044
Alignment:
Q  54 aagtgatgagactcaagggcaaaagagacaaatcggtactatgtacttccgtggttgagaaactcgatttcaagaagctaggaatagcagcttctctaag 153  Q
    ||||||||||| ||||||| ||||||||||||| ||  |||||||||| |  ||| | ||||||| ||| ||| |||||||| | ||||| |||| ||      
T  26806877 aagtgatgagattcaagggtaaaagagacaaatagg-gctatgtactttcacggtagggaaactcaattccaaaaagctagggagagcagtttctataca 26806975  T
Q  154 aatcaattctgaagatggaaacttacggc-gtcggtagagtattggcagagaaccaaacatattgaaat 221  Q
    |||| |||||||| ||| |||| |||||| | ||||||||| ||||  || |||||||||  |||||||    
T  26806976 aatcgattctgaaaatgcaaacgtacggcgggcggtagagtgttggtggataaccaaacaccttgaaat 26807044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 11006292 - 11006358
Alignment:
Q  18 agggatttgtccaatataaaaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaat 86  Q
    |||||||| || ||||||||||  | ||||||||  |||||||||||  ||||||||||||||||||||    
T  11006292 agggatttttcaaatataaaaa--gaatgtgaaaataagtgatgagaaccaagggcaaaagagacaaat 11006358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 11006557 - 11006505
Alignment:
Q  117 tcgatttcaagaagctaggaatagcagcttctctaagaatcaattctgaagat 169  Q
    ||||||||||||||||||||| |||| |||| | || ||| ||||||||||||    
T  11006557 tcgatttcaagaagctaggaagagcaccttcacaaaaaattaattctgaagat 11006505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 20231584 - 20231368
Alignment:
Q  10 gtaggtggagggatttgtccaatataaaaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaatcggtactatgtacttccgtggtt 109  Q
    ||||||| || |||||||| |||||||| | |  |||||||| ||| ||||||||||||||||||||| |||||||| |||  | ||| |||  |||||     
T  20231584 gtaggtgaagagatttgtcaaatataaaga-gttatgtgaaaggaactgatgagactcaagggcaaaatagacaaat-ggtgttgtgtgcttatgtggta 20231487  T
Q  110 gagaaactcgatttcaagaagctaggaatagcagcttctctaagaatcaattctgaagatggaaacttacggcgtcggtagagtattggcagagaaccaa 209  Q
    |||| |||| ||||||||||| ||||||||||  ||| | | | |||||||| |||| |||||||| |||| || ||||||||| | ||  |||||||||    
T  20231486 gagagactcaatttcaagaagttaggaatagccacttatttcataatcaattttgaatatggaaacgtacgacgacggtagagtgtgggaggagaaccaa 20231387  T
Q  210 acatattgaaatcgcgttt 228  Q
    | || ||||||||||||||    
T  20231386 aaatgttgaaatcgcgttt 20231368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 161
Target Start/End: Original strand, 1594098 - 1594223
Alignment:
Q  36 aaaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaatcggtactatgtacttccgtggttgagaaactcgatttcaagaagctagg 135  Q
    |||||||  ||||||| |||||||||||| ||||||||||||| ||||||  | |  | |||| |||   ||| | ||||||| ||||||| |||||| |    
T  1594098 aaaaaggtttgtgaaaggaagtgatgagattcaagggcaaaagggacaaacagatgttgtgtatttctaaggtagggaaactcaatttcaaaaagctaag 1594197  T
Q  136 aatagcagcttctctaagaatcaatt 161  Q
    || ||||||||||  |||||||||||    
T  1594198 aagagcagcttctggaagaatcaatt 1594223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 43153122 - 43153272
Alignment:
Q  37 aaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaatcggtactatgtacttccgtggttgagaaactcgatttcaagaagctagga 136  Q
    |||||| |||||||| ||||| || ||| ||||||| ||||||||||||| | || |||||||||| |   |||| |||||||||| ||||||||||||     
T  43153122 aaaaggtatgtgaaaggaagtaataagattcaagggtaaaagagacaaatggtta-tatgtacttctgcttttgataaactcgattccaagaagctaggg 43153220  T
Q  137 atagcagcttctctaagaatcaattctgaagatggaaacttacggcgtcggt 188  Q
    | ||||||||||| ||||||| ||| ||| |||| |||| ||||||| ||||    
T  43153221 agagcagcttctccaagaatcgattttgaggatgaaaacgtacggcggcggt 43153272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 3748469 - 3748420
Alignment:
Q  37 aaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaat 86  Q
    |||||| |||||||| |||||| ||||| |||||||||||||||||||||    
T  3748469 aaaaggtatgtgaaaggaagtgttgagattcaagggcaaaagagacaaat 3748420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 19204618 - 19204685
Alignment:
Q  18 agggatttgtccaatataaaaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaat 86  Q
    ||||||||||| ||| |||||| |  ||||||||  ||||||||||| ||||||| |||||||||||||    
T  19204618 agggatttgtcaaatttaaaaa-gatatgtgaaagaaagtgatgagattcaagggtaaaagagacaaat 19204685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 280
Target Start/End: Original strand, 3606295 - 3606537
Alignment:
Q  37 aaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaatcggtactatgtacttccgtggttgagaaactcgatttcaagaagctagga 136  Q
    |||||| |||||||| |||||||  ||| ||||||| ||||||||||||| |||  | ||||||| |  | | || | || ||||||||||||||||||     
T  3606295 aaaaggtatgtgaaaggaagtgacaagattcaagggtaaaagagacaaat-ggtgttgtgtactttcacgttggatagacacgatttcaagaagctaggg 3606393  T
Q  137 atagcagcttctctaagaatcaattctgaagatggaaacttacggcgtcggtagagtattggcagagaaccaaacatattgaaatcgcgtttcatgggaa 236  Q
    | ||||||||||| ||||||| ||| || ||||| |||| || || | |||||  |  ||||  || ||||||||| | ||||||| ||||||| |   |    
T  3606394 agagcagcttctccaagaatcgattttgtagatgaaaacgtatggtggcggtaaggcgttggaggaaaaccaaacacagtgaaatcacgtttcaggaata 3606493  T
Q  237 ggacgtacgtttgattgtttccaccgggtatccaaacatagact 280  Q
    |||||| ||||| | ||||| | ||| | | |||||||||||||    
T  3606494 ggacgtgcgtttaagtgttttcgccgtgcaaccaaacatagact 3606537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 7765901 - 7765968
Alignment:
Q  18 agggatttgtccaatataaaaaagggatgtgaaatgaagtgatgagactcaagggcaaaagagacaaat 86  Q
    ||||||||||| ||| |||||| |  ||||||||  ||||||||||| ||||||| |||||||||||||    
T  7765901 agggatttgtcaaatttaaaaa-gatatgtgaaagaaagtgatgagattcaagggtaaaagagacaaat 7765968  T

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