View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10170_low_6 (Length: 413)
Name: NF10170_low_6
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10170_low_6 |
 | |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 6310033 - 6310414
Alignment:
| Q |
18 |
actgctctttttgagagctccacatatccatccttaggtgagacttttccaaaagcattcaagctgaaaagctggagggaattttgggaattcatcttct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310033 |
actgctctttttgagagctccacatatccatccttaggtgagacttttccaaaagcattcaagctgaaaagctggagggaattttgggaattcatcttct |
6310132 |
T |
|
| Q |
118 |
taacttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310133 |
taacttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctac |
6310232 |
T |
|
| Q |
218 |
tccaatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310233 |
tccaatcaagttttgcagaagttctgaattatgtacatcatctattacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaat |
6310332 |
T |
|
| Q |
318 |
ttggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattgatcccatgtccctttg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6310333 |
ttggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttg |
6310414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 14405255 - 14404882
Alignment:
| Q |
18 |
actgctctttttgagagctccacatatccatccttaggtgagacttttccaaaagcattcaagctgaaaagctggagggaattttgggaattcatcttct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||| | |||||| |||| |||||||||| |
|
|
| T |
14405255 |
actgctctttttgagagctccacatatccatccttaggcgagactttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttct |
14405156 |
T |
|
| Q |
118 |
taacttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctat |
217 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14405155 |
taacttcataaattttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagccaaccatgtcccac |
14405056 |
T |
|
| Q |
218 |
tccaatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaat |
317 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| | |
|
|
| T |
14405055 |
tccaatcaagttttgaagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatagatggtattagt |
14404956 |
T |
|
| Q |
318 |
ttggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattgatcccatg |
391 |
Q |
| |
|
|||| | | |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
14404955 |
ttgggactgtcaatatcaagatcttcccttagtaacttggaaagaagtttgttgcacgcgtaattgattccatg |
14404882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 391
Target Start/End: Original strand, 5607604 - 5607975
Alignment:
| Q |
20 |
tgctctttttgagagctccacatatccatccttaggtgagacttttccaaaagcattcaagctgaaaagctggagggaattttgggaattcatcttctta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |||| |||||||||||| |
|
|
| T |
5607604 |
tgctctttttgagagctccacatatccatccttaggtgagactttgtcaaaagcattcaagctaaaaattctgagggaatttcgggagttcatcttctta |
5607703 |
T |
|
| Q |
120 |
acttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctattc |
219 |
Q |
| |
|
|||||||| ||| | | ||| ||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
5607704 |
acttcatatattgtcttaattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactc |
5607803 |
T |
|
| Q |
220 |
caatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaattt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| ||||| ||| |
|
|
| T |
5607804 |
caatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagttt |
5607903 |
T |
|
| Q |
320 |
ggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattgatcccatg |
391 |
Q |
| |
|
|| ||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
5607904 |
gggagtgtcaatatcaagatcttcttttagtaacttacaaagaagtttgttgcatgtgtaattgattccatg |
5607975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 5627766 - 5627395
Alignment:
| Q |
20 |
tgctctttttgagagctccacatatccatccttaggtgagacttttccaaaagcattcaagctgaaaagctggagggaattttgggaattcatcttctta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |||| |||||||||||| |
|
|
| T |
5627766 |
tgctctttttgagagctccacatatccatccttaggtgagactttgtcaaaagcattcaagctaaaaattctgagggaatttcgggagttcatcttctta |
5627667 |
T |
|
| Q |
120 |
acttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctattc |
219 |
Q |
| |
|
|||||||| ||| | | ||| ||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
5627666 |
acttcatatattgtcttaattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactc |
5627567 |
T |
|
| Q |
220 |
caatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaattt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| ||||| ||| |
|
|
| T |
5627566 |
caatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagttt |
5627467 |
T |
|
| Q |
320 |
ggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattgatcccatg |
391 |
Q |
| |
|
|| ||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
5627466 |
gggagtgtcaatatcaagatcttcttttagtaacttacaaagaagtttgttgcatgtgtaattgattccatg |
5627395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 5550325 - 5549960
Alignment:
| Q |
20 |
tgctctttttgagagctccacatatccatccttaggtgagacttttccaaaagcattcaagctgaaaagctggagggaattttgggaattcatcttctta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
5550325 |
tgctctttttgagagctccacatatccatccttaggtgagactttgttaaaagcattcaaacaaaaaagtcggagggaatttcgggagttcatcttctta |
5550226 |
T |
|
| Q |
120 |
acttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctattc |
219 |
Q |
| |
|
|||||||| ||| | | ||| ||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
5550225 |
acttcatatattgtcttaattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactc |
5550126 |
T |
|
| Q |
220 |
caatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaattt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| ||||| ||| |
|
|
| T |
5550125 |
caatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagttt |
5550026 |
T |
|
| Q |
320 |
ggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattgat |
385 |
Q |
| |
|
|| ||| ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5550025 |
gggagtgtcaatatcaagatcttcttttagtaacttagaaagaagtttgttgcatgtgtaattgat |
5549960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 391
Target Start/End: Complemental strand, 13165416 - 13165046
Alignment:
| Q |
21 |
gctctttttgagagctccacatatccatccttaggtgagacttttccaaaagcattcaagctgaaaagctggagggaattttgggaattcatcttcttaa |
120 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| |||| | ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13165416 |
gctctttttgagagctccacaaatccctccttagggaagacagtgtcaaaagcattcaagcagaaaagctggagggaattttgggagttcatcttcttaa |
13165317 |
T |
|
| Q |
121 |
cttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctattcc |
220 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||| |
|
|
| T |
13165316 |
cttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaaccatgtcccactcc |
13165217 |
T |
|
| Q |
221 |
aatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttg |
320 |
Q |
| |
|
|||||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| |
|
|
| T |
13165216 |
aatcaagttttgtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttcatgcgtttgagtcttctcctgatcatggatggtattactttg |
13165117 |
T |
|
| Q |
321 |
gaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattgatcccatg |
391 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
13165116 |
agagtggtaatatcaaggtcttcccctagtaacttggaaagaagtttgttgcatgtgtcattgattccatg |
13165046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 32633801 - 32633432
Alignment:
| Q |
22 |
ctctttttgagagctccacatatccatccttaggtgagacttttccaaaagcattcaagctgaaaagctggagggaattttgggaattcatcttcttaac |
121 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||| ||| | || ||||| | ||||| |
|
|
| T |
32633801 |
ctctttctgagagctccacatatccctccttaggtaagactttgtcaaaagcattgaagctgaaaagctggagggagtttcgagagttcatttctttaac |
32633702 |
T |
|
| Q |
122 |
ttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctattcca |
221 |
Q |
| |
|
|| || |||||| ||||| |||||||| | || |||||||||||||| ||||| ||||||||| |||||||| |||||||||||||| || | |||| |
|
|
| T |
32633701 |
ttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattcccgactcca |
32633602 |
T |
|
| Q |
222 |
atcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttgg |
321 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
32633601 |
atcaagttttgcagaagttccaaagtatgaacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcatggatggtattactttgg |
32633502 |
T |
|
| Q |
322 |
aagtatcaatatcaagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattgatcccatg |
391 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||| ||||| |
|
|
| T |
32633501 |
cagattcaatatcaagatcttcccttagtaacttagaaagaagtttgttgcatatgaaattgattccatg |
32633432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 84 - 391
Target Start/End: Complemental strand, 5571844 - 5571537
Alignment:
| Q |
84 |
aaaagctggagggaattttgggaattcatcttcttaacttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatga |
183 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
5571844 |
aaaagttggagggaattttgggagttcatcttcttaacttcataaatttcgtcaattcctccacttatcagcacatgtttatccctagtcgtcacaatga |
5571745 |
T |
|
| Q |
184 |
ctgtgctaccagatcctagccaaccatgtcctattccaatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcg |
283 |
Q |
| |
|
|| ||||||||| ||| ||||||||| || | ||||||||||| |||||||||||| || |||||||||||||||| |||||||||||||||||| | |
|
|
| T |
5571744 |
ctatgctaccaggtccaagccaaccacctctcactccaatcaagtcttgcagaagttcagagttatgtacatcatctaatacaatgaaagatttcatatg |
5571645 |
T |
|
| Q |
284 |
tttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattg |
383 |
Q |
| |
|
| ||||||||||| ||||||| | ||| |||| ||||| ||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5571644 |
tctgagtcttctcttgatcatggctgggattactttgggagtgtcaatacgaagatcttcccctagtaacttggaaagaagtttgttgcacgtgtaattg |
5571545 |
T |
|
| Q |
384 |
atcccatg |
391 |
Q |
| |
|
|| ||||| |
|
|
| T |
5571544 |
attccatg |
5571537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 69 - 404
Target Start/End: Original strand, 12176916 - 12177251
Alignment:
| Q |
69 |
aaagcattcaagctgaaaagctggagggaattttgggaattcatcttcttaacttcataaattttttcaatccctccacttatcaagacatgcttatccc |
168 |
Q |
| |
|
||||||||||| ||||| | | || ||| ||||| || ||||| | |||||||| || ||||| ||||| ||||| | | |||| ||||||||||| | |
|
|
| T |
12176916 |
aaagcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctc |
12177015 |
T |
|
| Q |
169 |
tagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctattccaatcaagttttgcagaagttctgaattatgtacatcatctagtacaat |
268 |
Q |
| |
|
| || |||||||||||| |||||||| ||| || ||| |||| ||| ||||||||| || | ||||||||| || || | ||||||||||||||||| |
|
|
| T |
12177016 |
tggttgtcacaatgactctgctaccaactccaaggcaatcatgccctgctccaatcaaattatctagaagttctaaagtacgaacatcatctagtacaat |
12177115 |
T |
|
| Q |
269 |
gaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttg |
368 |
Q |
| |
|
||||| ||||||||||||||||||| |||| | ||| |||| ||||| ||| | ||| ||||||| ||||||||||| |||||||| ||||||||| || |
|
|
| T |
12177116 |
gaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagtaacttagaaagaagtctg |
12177215 |
T |
|
| Q |
369 |
ttgcatgtgtaattgatcccatgtccctttgcttct |
404 |
Q |
| |
|
||| |||||||| ||| |||||||| ||||| |||| |
|
|
| T |
12177216 |
ttgtatgtgtaactgagcccatgtctctttgattct |
12177251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 69 - 404
Target Start/End: Original strand, 12421344 - 12421679
Alignment:
| Q |
69 |
aaagcattcaagctgaaaagctggagggaattttgggaattcatcttcttaacttcataaattttttcaatccctccacttatcaagacatgcttatccc |
168 |
Q |
| |
|
||||||||||| ||||| | | || ||| ||||| || ||||| | |||||||| || ||||| ||||| ||||| | | |||| ||||||||||| | |
|
|
| T |
12421344 |
aaagcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctc |
12421443 |
T |
|
| Q |
169 |
tagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctattccaatcaagttttgcagaagttctgaattatgtacatcatctagtacaat |
268 |
Q |
| |
|
| || |||||||||||| |||||||| ||| || ||| |||| ||| ||||||||| || | ||||||||| || || | ||||||||||||||||| |
|
|
| T |
12421444 |
tggttgtcacaatgactctgctaccaactccaaggcaatcatgccctgctccaatcaaattatctagaagttctaaagtacgaacatcatctagtacaat |
12421543 |
T |
|
| Q |
269 |
gaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttg |
368 |
Q |
| |
|
||||| ||||||||||||||||||| |||| | ||| |||| ||||| ||| | ||| ||||||| ||||||||||| |||||||| ||||||||| || |
|
|
| T |
12421544 |
gaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagtaacttagaaagaagtctg |
12421643 |
T |
|
| Q |
369 |
ttgcatgtgtaattgatcccatgtccctttgcttct |
404 |
Q |
| |
|
||| |||||||| ||| |||||||| ||||| |||| |
|
|
| T |
12421644 |
ttgtatgtgtaactgagcccatgtctctttgattct |
12421679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 99 - 404
Target Start/End: Original strand, 12188267 - 12188572
Alignment:
| Q |
99 |
ttttgggaattcatcttcttaacttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatc |
198 |
Q |
| |
|
||||| |||||||| |||| |||||||| ||||| ||||| ||||| | |||| |||| |||||| || || |||||||||||| ||||||||| || |
|
|
| T |
12188267 |
ttttgagaattcattttctcaacttcatgaatttcgtcaattcctcctcccgtcaacacatacttatctctggttgtcacaatgactctgctaccagctc |
12188366 |
T |
|
| Q |
199 |
ctagccaaccatgtcctattccaatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcat |
298 |
Q |
| |
|
| || ||| |||| ||| ||||||||| || | ||||||||| || || | |||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
12188367 |
caaggcaatcatgccctgctccaatcaaattatttagaagttctaaaatacgaacatcatctagtacaatgaaagctttcatgcgtttgagtcttttcat |
12188466 |
T |
|
| Q |
299 |
gatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattgatcccatgtcccttt |
398 |
Q |
| |
|
| ||| |||| ||||| ||| | ||| ||||||| ||||||||||| |||| ||| ||||||||| ||||| |||||||| ||| |||||||| |||| |
|
|
| T |
12188467 |
aaccatagatgatattactttaggagtctcaatatgaagatcttcccctagtagcttagaaagaagtctgttgtatgtgtaactgagcccatgtctcttt |
12188566 |
T |
|
| Q |
399 |
gcttct |
404 |
Q |
| |
|
| |||| |
|
|
| T |
12188567 |
gattct |
12188572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 99 - 404
Target Start/End: Original strand, 12432695 - 12433000
Alignment:
| Q |
99 |
ttttgggaattcatcttcttaacttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatc |
198 |
Q |
| |
|
||||| |||||||| |||| |||||||| ||||| ||||| ||||| | |||| |||| |||||| || || |||||||||||| ||||||||| || |
|
|
| T |
12432695 |
ttttgagaattcattttctcaacttcatgaatttcgtcaattcctcctcccgtcaacacatacttatctctggttgtcacaatgactctgctaccagctc |
12432794 |
T |
|
| Q |
199 |
ctagccaaccatgtcctattccaatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcat |
298 |
Q |
| |
|
| || ||| |||| ||| ||||||||| || | ||||||||| || || | |||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
12432795 |
caaggcaatcatgccctgctccaatcaaattatttagaagttctaaaatacgaacatcatctagtacaatgaaagctttcatgcgtttgagtcttttcat |
12432894 |
T |
|
| Q |
299 |
gatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattgatcccatgtcccttt |
398 |
Q |
| |
|
| ||| |||| ||||| ||| | ||| ||||||| ||||||||||| |||| ||| ||||||||| ||||| |||||||| ||| |||||||| |||| |
|
|
| T |
12432895 |
aaccatagatgatattactttaggagtctcaatatgaagatcttcccctagtagcttagaaagaagtctgttgtatgtgtaactgagcccatgtctcttt |
12432994 |
T |
|
| Q |
399 |
gcttct |
404 |
Q |
| |
|
| |||| |
|
|
| T |
12432995 |
gattct |
12433000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 135 - 344
Target Start/End: Original strand, 9394148 - 9394357
Alignment:
| Q |
135 |
tcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctattccaatcaagttttgca |
234 |
Q |
| |
|
|||||||||| | |||||| ||||||||||| || || |||||||| || ||||||||| ||| || ||| |||| |||| ||||||||| |||| | |
|
|
| T |
9394148 |
tcaatccctctgcctatcaacacatgcttatctctggttgtcacaatttctctgctaccagctccaaggcaatcatgccctactccaatcaaattttcta |
9394247 |
T |
|
| Q |
235 |
gaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatc |
334 |
Q |
| |
|
|||||| | || |||| | || |||||||||||||||| ||||||| ||||||||||| ||| | ||| |||| ||||| ||||| ||| |||||| | |
|
|
| T |
9394248 |
gaagttttaaagtatgaatgtcgtctagtacaatgaaagctttcatgtgtttgagtctttacataaccatagatgatattactttgggagtgtcaatacc |
9394347 |
T |
|
| Q |
335 |
aagatcttcc |
344 |
Q |
| |
|
|||||||||| |
|
|
| T |
9394348 |
aagatcttcc |
9394357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 5649914 - 5649855
Alignment:
| Q |
236 |
aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttct |
295 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||| |||| |||||||||||| |
|
|
| T |
5649914 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttct |
5649855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 5603257 - 5603323
Alignment:
| Q |
236 |
aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatc |
302 |
Q |
| |
|
|||||||||| || |||||||||||| ||||| ||||| ||| |||| |||||||||||| |||||| |
|
|
| T |
5603257 |
aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttcttatgatc |
5603323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 5632113 - 5632047
Alignment:
| Q |
236 |
aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatc |
302 |
Q |
| |
|
|||||||||| || |||||||||||| ||||| ||||| ||| |||| |||||||||||| |||||| |
|
|
| T |
5632113 |
aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttcttatgatc |
5632047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 13598 - 13971
Alignment:
| Q |
18 |
actgctctttttgagagctccacatatccatccttaggtgagacttttccaaaagcattcaagctgaaaagctggagggaattttgggaattcatcttct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||| | |||||| |||| |||||||||| |
|
|
| T |
13598 |
actgctctttttgagagctccacatatccatccttaggcgagactttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttct |
13697 |
T |
|
| Q |
118 |
taacttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctat |
217 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13698 |
taacttcataaattttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagccaaccatgtcccac |
13797 |
T |
|
| Q |
218 |
tccaatcaagttttgcagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaat |
317 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| | |
|
|
| T |
13798 |
tccaatcaagttttgaagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatagatggtattagt |
13897 |
T |
|
| Q |
318 |
ttggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattgatcccatg |
391 |
Q |
| |
|
|||| | | |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
13898 |
ttgggactgtcaatatcaagatcttcccttagtaacttggaaagaagtttgttgcacgcgtaattgattccatg |
13971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 141 - 309
Target Start/End: Original strand, 19492709 - 19492877
Alignment:
| Q |
141 |
cctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctattccaatcaagttttgcagaagtt |
240 |
Q |
| |
|
||||||||| ||| |||| || ||||||||| |||||||||||| ||||||||| ||||||||||||| || || |||||| ||| |||| || |
|
|
| T |
19492709 |
cctccacttttcagcacatcctcatccctagtagtcacaatgactatgctaccagctcctagccaaccacctctctctctaatcaaagttttcagagttt |
19492808 |
T |
|
| Q |
241 |
ctgaattatgtacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatg |
309 |
Q |
| |
|
||| | || | |||||||||||||||||||||| |||||| | |||||||||||| |||| ||| |||| |
|
|
| T |
19492809 |
ctggactacgaacatcatctagtacaatgaaagctttcattcctttgagtcttctaatgaccatggatg |
19492877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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