View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10170_low_8 (Length: 345)
Name: NF10170_low_8
Description: NF10170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10170_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 34918771 - 34919103
Alignment:
| Q |
13 |
cagagacagcaactacaaaacgatcaaatcaagaaactaaaacaaggattctataatgtctctcattccaagcttctttggcggtagacaaaacaacgtt |
112 |
Q |
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| T |
34918771 |
cagaaacagcaactacgaaacgatcaaatcaagaaactaaaacaaggattctacaatgtctctcattccaagcttctttggcggtagacaaaacaacgtt |
34918870 |
T |
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| Q |
113 |
tttgatccattctcaatggatatatgggatccactccaaggttttccatcatctgctcgtgaaacaactgcactagcaaacacacgtgtggactggaaag |
212 |
Q |
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| T |
34918871 |
tttgatccattctcaatggatatatgggatccactccaaggttttccatcatctgctcgtgaaacaactgcactagcaaacacacgtgtggactggaaag |
34918970 |
T |
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| Q |
213 |
aaacacaagaagctcacgtgttcagtgtagatcttcctggtttgaagaaagaagaagtgaaagttgaaatagaagatggaaatgtgttgcagataagtgg |
312 |
Q |
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| T |
34918971 |
aaacacaagaagctcacgtgttcagtgtagatcttcctggtttgaagaaagaagaagtgaaagttgaaatagaagatggaaatgtgttgcagataagtgg |
34919070 |
T |
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| Q |
313 |
tgagagaaacaaagagcaggaagagaaggatga |
345 |
Q |
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| T |
34919071 |
tgagagaaacaaagagcaggaagagaaggatga |
34919103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 24041014 - 24040966
Alignment:
| Q |
242 |
gatcttcctggtttgaagaaagaagaagtgaaagttgaaatagaagatg |
290 |
Q |
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| T |
24041014 |
gatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatg |
24040966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 36296731 - 36296683
Alignment:
| Q |
242 |
gatcttcctggtttgaagaaagaagaagtgaaagttgaaatagaagatg |
290 |
Q |
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| T |
36296731 |
gatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatg |
36296683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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