View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10171_high_2 (Length: 419)

Name: NF10171_high_2
Description: NF10171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10171_high_2
NF10171_high_2
[»] chr7 (1 HSPs)
chr7 (13-402)||(10714556-10714945)
[»] chr1 (1 HSPs)
chr1 (182-232)||(26783550-26783600)
[»] chr3 (1 HSPs)
chr3 (180-232)||(35398148-35398200)


Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Original strand, 10714556 - 10714945
Alignment:
Q  13 aaaaaacaaacacaaacaaagagatttaaggttagaaaacaattgcannnnnnnagttggtttatggtatcctcctcgcacaacggtggagactgatccc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  10714556 aaaaaacaaacacaaacaaagagatttaaggttagaaaacaattgcatttttttagttggtttatggtatcctcctcgcacaacggtggagactgatccc 10714655  T
Q  113 ttcgaggatctacgcacattgaaggattgtttttcaaaaagtgaatttacatatgtatcagcatatattttttggttttccataggttccctccaccaga 212  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10714656 ttcgaggatctacgcacattgaaggattgcttttcaaaaagtgaatttacatatgtatcagcatatattttttggttttccataggttccctccaccaga 10714755  T
Q  213 tgtaatcttatttgaggcattgtcgggtacttaaatgtaggcacatttcccaggcgggattcaaactttagtttgccacattgtcagagtctaacgcatt 312  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10714756 tgtaatcttatttgaggtattgtcgggtacttaaatgtaggcacatttcccaggcgggattcgaactttagtttgccacattgtcagagtctaacgcatt 10714855  T
Q  313 ctggtagactcaaccctcatttgtatactcattatgtaaaaaatgatataaaaagacatccatgtagaggaacaaatcacaactatgtta 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10714856 ctggtagactcaaccctcatttgtatactcattatgtaaaaaatgatataaaaagacatccatgtagaggaacaaatcacaactatgtta 10714945  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 26783600 - 26783550
Alignment:
Q  182 ttttggttttccataggttccctccaccagatgtaatcttatttgaggcat 232  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||||||||    
T  26783600 ttttggttttccattggttccctccacgagaggtaatcctatttgaggcat 26783550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 35398200 - 35398148
Alignment:
Q  180 ttttttggttttccataggttccctccaccagatgtaatcttatttgaggcat 232  Q
    ||||| ||||||| |||||||||||||||| || |||||| ||||||||||||    
T  35398200 tttttgggttttcaataggttccctccaccggaggtaatcgtatttgaggcat 35398148  T

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