View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10171_low_3 (Length: 407)
Name: NF10171_low_3
Description: NF10171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10171_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 172 - 390
Target Start/End: Original strand, 42608975 - 42609193
Alignment:
| Q |
172 |
ttacattagagtagcacaatcctagcagataggtagaggaacaccattccactcctttagacaatccaacatgggatcaataaaccttccatcacacatt |
271 |
Q |
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| T |
42608975 |
ttacattagagtagcacaatcctagcagataggtagaggaacaccattccactcctttagacaatccaacatgggatcaataaaccttccatcacacatt |
42609074 |
T |
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| Q |
272 |
gctgtgaaaaccttatcacagtcctcaccaggtgacctaattttctcacctgtcagcaaacttgtccctaaagtttctctcatgaacttgtacaatggat |
371 |
Q |
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| T |
42609075 |
gctgtgaaaaccttatcacagtcctcaccaggtgacctaattttctcacctgtcagcaaacttgtccctaaagtttctctcatgaacttgtacaatggat |
42609174 |
T |
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| Q |
372 |
atgatctacattccttgat |
390 |
Q |
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| T |
42609175 |
atgatctacattccttgat |
42609193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 42608822 - 42608909
Alignment:
| Q |
15 |
gaggttgcacacaaagaacatattaatataatataacatcaaatcatacagattgttatcgtagtttaaaatacatgcccaacatcat |
102 |
Q |
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| T |
42608822 |
gaggttgcacacaaagaacgtattcatataatataacatcaaatcatacagattgttatcgtagtttaaaatacatgcccaacatcat |
42608909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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