View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10171_low_5 (Length: 297)
Name: NF10171_low_5
Description: NF10171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10171_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 39111575 - 39111295
Alignment:
| Q |
1 |
ccagaagggatcttaggattttaggagccatgataaagtaaaacaaatgcttattttgtactgatttttggaatgtggactgtggtatgttgaagtcatt |
100 |
Q |
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| T |
39111575 |
ccagaagggatcttaggattttaggagccaggataaagtaaaacaaatgcttattctgtactgatttttggaatgtggactgtggtatgttgaagtcatt |
39111476 |
T |
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| Q |
101 |
agagaatgagagacataggtttcagtttagtttacattaatagaccaattgtcaaggaaatatgtcatgccatgcaaagaaattaatgtaaacttaatta |
200 |
Q |
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| T |
39111475 |
agagaatgagagacataggtttcagtttagtttacattaatagaccaattgtcaaggaaatatgtcatgccatgcaaagaaattaatgtaaacttaatta |
39111376 |
T |
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| Q |
201 |
aatttgatctcagagaaagattgaaaaggcatttatcactatatttttacattggttctccgcgtgatttaatcatattca |
281 |
Q |
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| T |
39111375 |
aatttgatctcagagaaagattgaaaaggcatttatcactatatttttacattggttctccgcgtgatttaatcatattca |
39111295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 39531345 - 39531437
Alignment:
| Q |
11 |
tcttaggattttaggagccatgataaagtaaaacaaatgcttattttgtactgatttttggaatgtggactgtggtatgt--tgaagtcatta |
101 |
Q |
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| T |
39531345 |
tcttaggattttaggagtcataatgaattgaaacaaatacttaatttgtgatgatttttgcaatatggattgtggtgtgtgatgaagtcatta |
39531437 |
T |
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