View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10172_1 (Length: 618)
Name: NF10172_1
Description: NF10172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10172_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 2 - 618
Target Start/End: Original strand, 44960190 - 44960806
Alignment:
| Q |
2 |
atcttgctcactgccaccactgctagttcttctttttcttcctcccatggattcttctccacttgtttcagataaatctaacgtggttgatgaagaagga |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44960190 |
atcttgctcactgccaccactgctagttcttctttttcttcctcccatggattcttctccacttgtttcagataaatctaacgtggttgatgaagaagga |
44960289 |
T |
|
| Q |
102 |
gcgttcgcgttagcgtttgagtttgtgtttccatctcgaacctcttgtttagcctgcaacatatttgttaggttatttgattggaaattcaaaagcattg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44960290 |
gcgttcgcgttagcgtttgagtttgtgtttccatctcgaacctcttgtttagcctgcaacatatttgttaggttatttgattggaaattcaaaagcattg |
44960389 |
T |
|
| Q |
202 |
aagtgttgttgttgctgttgttatctgaaggagataaaccaattccaggaaaaagagttcttcgttgttgaagtgagaaattcgggttgaagtaagaaga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44960390 |
aagtgttgttgttgctgttgttatctgaaggagataaaccaattccaggaaaaagagttcttcgttgttgaagtgagaaattcgggttgaagtaagaaga |
44960489 |
T |
|
| Q |
302 |
tcttagctgagatggaacagacatggatgagcctgagctacgaagtgagatattgagagatgtgaagttagcaggtatagttccagtaccagtggcggct |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44960490 |
tcttagctgagatggaacagacatggatgagcctgagctacgaagtgagatattgagagatgtgaagttagcaggtatagttccagtaccagtggcggct |
44960589 |
T |
|
| Q |
402 |
ataacagcaggttcagcttgttgaagaagccattcaatggtttcaccatcagatttatggccaagttcgcgtgtaagctgaaaaactctagcagcacaaa |
501 |
Q |
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| T |
44960590 |
ataacagctggttcagcttgttgaagaagccattcaatggtttcaccatcagatttatggccaagttcgcgtgtaagctgaaaaactctagcagcacaaa |
44960689 |
T |
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| Q |
502 |
gtgccggcattcggatgcggcggccacggccttctactttggtatgacggtctttggtggaagttcttttcggaggaggttttttgttggcagggtcaga |
601 |
Q |
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| T |
44960690 |
gtgccggcattcggatgcggcggccacggccttctactttggtatgacggtctttggtggaagttcttttcggaggaggttttttgttggcagggtcaga |
44960789 |
T |
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| Q |
602 |
ggttgttggtgttgatg |
618 |
Q |
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| T |
44960790 |
ggttgttggtgttgatg |
44960806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 319 - 586
Target Start/End: Original strand, 17429097 - 17429364
Alignment:
| Q |
319 |
cagacatggatgagcctgagctacgaagtgagatattgagagatgtgaagttagcaggtatagttccagtaccagtggcggctataacagcaggttcagc |
418 |
Q |
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||||||||| |||||||||||| | ||| || ||||| || || || ||||| || || || ||||| || || |||||||| || || || || || || |
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| T |
17429097 |
cagacatggttgagcctgagcttctaagagatatattaagtgaagtaaagttggccggaattgttcctgttccggtggcggcgatgacggctggctctgc |
17429196 |
T |
|
| Q |
419 |
ttgttgaagaagccattcaatggtttcaccatcagatttatggccaagttcgcgtgtaagctgaaaaactctagcagcacaaagtgccggcattcggatg |
518 |
Q |
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|||||||| ||||| ||||| || || || || |||||||| || || || || || ||||| || |||||||||||||| |||||||| ||||| |
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| T |
17429197 |
ctgttgaagcagccactcaatcgtctcgccgtctgatttatgtcccagctcacgcgtgagctggaacactctagcagcacaggccgccggcatacggatc |
17429296 |
T |
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| Q |
519 |
cggcggccacggccttctactttggtatgacggtctttggtggaagttcttttcggaggaggtttttt |
586 |
Q |
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| T |
17429297 |
cggcggcctcgtccgtctaccttcgtgtgccggtctttcgtcgaagctcgcttcggcggaggcttttt |
17429364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 470257 - 470306
Alignment:
| Q |
414 |
tcagcttgttgaagaagccattcaatggtttcaccatcagatttatggcc |
463 |
Q |
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| T |
470257 |
tcagcttgttgaagaagccactcaattgtttcaccatctgatttgtggcc |
470306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 562
Target Start/End: Complemental strand, 28042147 - 28042056
Alignment:
| Q |
471 |
cgtgtaagctgaaaaactctagcagcacaaagtgccggcattcggatgcggcggccacggccttctactttggtatgacggtctttggtgga |
562 |
Q |
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||||| ||||| || | |||||| || || |||| |||||| |||| |||||||||||||| | |||||||| ||||||||||||||||| |
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| T |
28042147 |
cgtgtgagctggaagattctagcggcgcagagtggcggcatacggacacggcggccacggccgttaactttggtgtgacggtctttggtgga |
28042056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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