View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10172_4 (Length: 410)

Name: NF10172_4
Description: NF10172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10172_4
NF10172_4
[»] chr2 (1 HSPs)
chr2 (28-410)||(40187842-40188224)
[»] chr6 (1 HSPs)
chr6 (128-173)||(8108914-8108959)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 28 - 410
Target Start/End: Original strand, 40187842 - 40188224
Alignment:
Q  28 taattaattaattatatgccacaaggttttgaaatgattatataagctacggcatgtcgaagaatatgt-ggttggtccagttgataaggattcaattct 126  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| ||| || ||||||||||||||||||| ||||||||||    
T  40187842 taattaattaattatatgccacaaggttttgaaataattatataagctaaggcatgtc-aagcatacgttggttggtccagttgataagaattcaattct 40187940  T
Q  127 tacaaggacctgagtttgaatcttgttgccgatgtgaggatctcattgatagatatataaaatgtaattaatcatgtcaacaatctaacaactttgaggc 226  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| || ||| || ||||||||||||||||  |||||||||||    
T  40187941 tacaaggatctgagtttgaatcttgttgccgatgtgaggatctcattgacggatatataagatataagtagtcatgtcaacaatctattaactttgaggc 40188040  T
Q  227 ttttgactctgatgagttcccgagactcgactcgtctaaactttaattcatatatnnnnnnngacaaggtacatcaaacaggtggttgaacactattatt 326  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  40188041 ttttaactctgatgagttcccgagactcaactcgtttaaactttaattcatatataaaaaaagacaaggtacatcaaacaggtggttgaacactattatt 40188140  T
Q  327 agctttagctctaatcatgttggctttacgtgtgactctaacatgatacacactcatagctaaaaccacaacaaatgcaacacc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40188141 agctttagctctaatcatgttggctttacgtgtgactctaacatgatacacactcatagctaaaaccacaacaaatgcaacacc 40188224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 8108914 - 8108959
Alignment:
Q  128 acaaggacctgagtttgaatcttgttgccgatgtgaggatctcatt 173  Q
    ||||| ||||||||||||||||| ||||| ||||||||| ||||||    
T  8108914 acaagaacctgagtttgaatcttattgccaatgtgaggacctcatt 8108959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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