View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10172_6 (Length: 365)

Name: NF10172_6
Description: NF10172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10172_6
NF10172_6
[»] chr3 (7 HSPs)
chr3 (144-365)||(40017247-40017469)
chr3 (13-116)||(40017497-40017600)
chr3 (187-227)||(41319327-41319367)
chr3 (192-229)||(13807176-13807213)
chr3 (192-232)||(9210837-9210877)
chr3 (187-227)||(46191362-46191402)
chr3 (192-232)||(52558140-52558180)
[»] chr4 (10 HSPs)
chr4 (187-227)||(34589723-34589763)
chr4 (187-227)||(18513258-18513298)
chr4 (192-227)||(5654608-5654643)
chr4 (192-227)||(10546155-10546190)
chr4 (197-227)||(26276026-26276056)
chr4 (199-227)||(13307891-13307919)
chr4 (187-227)||(14465311-14465351)
chr4 (192-240)||(20119952-20120000)
chr4 (199-227)||(37496718-37496746)
chr4 (192-236)||(43300623-43300667)
[»] chr7 (7 HSPs)
chr7 (192-237)||(44172897-44172942)
chr7 (196-236)||(35917388-35917428)
chr7 (187-227)||(38134423-38134463)
chr7 (199-232)||(2143865-2143898)
chr7 (199-227)||(2144556-2144584)
chr7 (187-227)||(4909153-4909193)
chr7 (199-227)||(5937438-5937466)
[»] chr1 (10 HSPs)
chr1 (190-227)||(3921672-3921709)
chr1 (192-227)||(11571592-11571627)
chr1 (197-232)||(14332420-14332455)
chr1 (192-227)||(40747790-40747825)
chr1 (192-236)||(498405-498448)
chr1 (187-227)||(2445872-2445912)
chr1 (187-227)||(17080898-17080938)
chr1 (199-227)||(18946051-18946079)
chr1 (187-231)||(28170384-28170427)
chr1 (187-227)||(43942326-43942366)
[»] chr8 (12 HSPs)
chr8 (191-227)||(34201063-34201099)
chr8 (187-227)||(37225760-37225800)
chr8 (187-227)||(40063953-40063993)
chr8 (197-232)||(1433357-1433392)
chr8 (199-230)||(1639504-1639535)
chr8 (187-226)||(14227224-14227263)
chr8 (188-227)||(14740733-14740772)
chr8 (197-227)||(10441215-10441245)
chr8 (197-227)||(29198496-29198526)
chr8 (193-227)||(42874530-42874564)
chr8 (187-227)||(12985394-12985434)
chr8 (199-227)||(31119101-31119129)
[»] chr6 (12 HSPs)
chr6 (187-227)||(4859130-4859170)
chr6 (197-232)||(10157996-10158031)
chr6 (192-226)||(2140499-2140533)
chr6 (197-227)||(9024193-9024223)
chr6 (191-228)||(33076414-33076451)
chr6 (187-223)||(1893390-1893426)
chr6 (188-240)||(6284665-6284717)
chr6 (199-227)||(6751899-6751927)
chr6 (199-227)||(10031584-10031612)
chr6 (199-227)||(19369831-19369859)
chr6 (191-227)||(29049891-29049927)
chr6 (199-227)||(29959189-29959217)
[»] chr5 (11 HSPs)
chr5 (187-227)||(32444768-32444808)
chr5 (187-226)||(9449471-9449510)
chr5 (193-236)||(11108511-11108554)
chr5 (192-227)||(11596472-11596507)
chr5 (187-225)||(28296330-28296368)
chr5 (187-225)||(39424643-39424681)
chr5 (197-227)||(41558671-41558701)
chr5 (197-227)||(43208291-43208321)
chr5 (187-220)||(9489773-9489806)
chr5 (199-227)||(30080518-30080546)
chr5 (187-227)||(38749580-38749620)
[»] chr2 (9 HSPs)
chr2 (187-227)||(18570974-18571014)
chr2 (187-227)||(26787815-26787855)
chr2 (187-227)||(40681984-40682024)
chr2 (189-232)||(44605151-44605194)
chr2 (192-226)||(30563416-30563450)
chr2 (192-241)||(19613616-19613665)
chr2 (195-227)||(6180882-6180914)
chr2 (187-227)||(10535776-10535816)
chr2 (199-227)||(43586022-43586050)
[»] scaffold0571 (1 HSPs)
scaffold0571 (192-238)||(7697-7743)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 144 - 365
Target Start/End: Complemental strand, 40017469 - 40017247
Alignment:
Q  144 taattttaagaagacattttcaactatgaaacacaaacacatgcaccaataacaatttgagaaaatgacataattcaatgtaataacatttgttagtagt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40017469 taattttaagaagacattttcaactatgaaacacaaacacatgcaccaataacaatttgagaaaatgacataattcaatgtaataacatttgttagtagt 40017370  T
Q  244 atcagggtgtcgtgtgtc-gaacactgacaacacaggacacctgacacgccatagacataagatcataagtgtagtgctacagagattagcaagtctaac 342  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |    
T  40017369 atcagggtgtcgtgtgtcagaacactgacaacacaggacacctgacaggccatcgacataagatcataagtgtagtgctacagggattagcaagtctacc 40017270  T
Q  343 aaaggattatctctaatcgttga 365  Q
    |||||||||||||||||||||||    
T  40017269 aaaggattatctctaatcgttga 40017247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 40017600 - 40017497
Alignment:
Q  13 aatattcataacaattggtcaaaatgaaaactggatttaatcacattctattacagaaatattaacagccttaatcaggtgcatgcaacaaatacaagct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40017600 aatattcataacaattggtcaaaatgaaaactggatttaatcacattctattacagaaatattaacagccttaatcaggtgcatgcaacaaatacaagct 40017501  T
Q  113 gaat 116  Q
    ||||    
T  40017500 gaat 40017497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 41319367 - 41319327
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  41319367 caccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 13807176 - 13807213
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaataa 229  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  13807176 ataacaatttgagaaaatcacataattcaatataataa 13807213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 9210877 - 9210837
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaataacat 232  Q
    |||| ||||||||||||||||||||||||||| ||| ||||    
T  9210877 ataataatttgagaaaatgacataattcaatggaatcacat 9210837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 46191402 - 46191362
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||||||| ||||||||||||| |||||||| ||||||||    
T  46191402 caccaataataatttgagaaaatcacataattaaatgtaat 46191362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 52558180 - 52558140
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaataacat 232  Q
    |||| |||||||||||| |||||||||||||||||| ||||    
T  52558180 ataaaaatttgagaaaaggacataattcaatgtaatcacat 52558140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 34589763 - 34589723
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  34589763 caccgataacaatttgagaaaatgacataattcaatgtaat 34589723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 18513298 - 18513258
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  18513298 caccgataataatttgagaaaatgacataattcaatgtaat 18513258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 5654643 - 5654608
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||||||||||||||||||||||||||||||    
T  5654643 ataataatttgagaaaatgacataattcaatgtaat 5654608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 10546155 - 10546190
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||||||||||||||||||||||||||||||    
T  10546155 ataataatttgagaaaatgacataattcaatgtaat 10546190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 26276056 - 26276026
Alignment:
Q  197 aatttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||||    
T  26276056 aatttgagaaaatgacataattcaatgtaat 26276026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 13307891 - 13307919
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||    
T  13307891 tttgagaaaatgacataattcaatgtaat 13307919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 14465351 - 14465311
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||| |||||||||||||||||||||||||| ||||    
T  14465351 caccgataataatttgagaaaatgacataattcaatttaat 14465311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 20119952 - 20120000
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaataacatttgttagt 240  Q
    |||| ||||||||||||||| |||||| |||||||| |||| |||||||    
T  20119952 ataataatttgagaaaatgaaataatttaatgtaatcacatgtgttagt 20120000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 37496718 - 37496746
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||    
T  37496718 tttgagaaaatgacataattcaatgtaat 37496746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 43300623 - 43300667
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaataacatttgt 236  Q
    |||| ||||||||||||| ||||||||||||||||| | ||||||    
T  43300623 ataataatttgagaaaattacataattcaatgtaatcatatttgt 43300667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 44172942 - 44172897
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaataacatttgtt 237  Q
    |||| ||||||||||||||||||||||||||||||| |||| ||||    
T  44172942 ataataatttgagaaaatgacataattcaatgtaatcacatgtgtt 44172897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 35917428 - 35917388
Alignment:
Q  196 caatttgagaaaatgacataattcaatgtaataacatttgt 236  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  35917428 caatttgagaaaatgatataattcaatgtaatcacatttgt 35917388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 38134463 - 38134423
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  38134463 caccgataataatttgagaaaatgacataattcaatgtaat 38134423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 2143898 - 2143865
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaataacat 232  Q
    ||||||||||||||||||||||||||||| ||||    
T  2143898 tttgagaaaatgacataattcaatgtaatcacat 2143865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 2144584 - 2144556
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||    
T  2144584 tttgagaaaatgacataattcaatgtaat 2144556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 4909153 - 4909193
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||||||| ||||||||||||| |||||||||| ||||||    
T  4909153 caccaataataatttgagaaaattacataattcattgtaat 4909193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 5937466 - 5937438
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||    
T  5937466 tttgagaaaatgacataattcaatgtaat 5937438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 3921672 - 3921709
Alignment:
Q  190 caataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||||| |||||||||||||||||||||||||||||||    
T  3921672 caataataatttgagaaaatgacataattcaatgtaat 3921709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 11571592 - 11571627
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||||||||||||||||||||||||||||||    
T  11571592 ataataatttgagaaaatgacataattcaatgtaat 11571627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 14332420 - 14332455
Alignment:
Q  197 aatttgagaaaatgacataattcaatgtaataacat 232  Q
    ||||||||||||||||||||||||||||||| ||||    
T  14332420 aatttgagaaaatgacataattcaatgtaatcacat 14332455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 40747825 - 40747790
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||||||||||||||||||||||||||||||    
T  40747825 ataataatttgagaaaatgacataattcaatgtaat 40747790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 498448 - 498405
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaataacatttgt 236  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||||    
T  498448 ataataatttga-aaaatgacataattcaatgtaattacatttgt 498405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 2445872 - 2445912
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||||| | |||||||||||||||||||||||||| ||||    
T  2445872 caccaatgataatttgagaaaatgacataattcaatttaat 2445912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 17080938 - 17080898
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||||||| ||||||||||||| |||||||| ||||||||    
T  17080938 caccaataataatttgagaaaataacataattgaatgtaat 17080898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 18946079 - 18946051
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||    
T  18946079 tttgagaaaatgacataattcaatgtaat 18946051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 28170384 - 28170427
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaataaca 231  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||    
T  28170384 caccaataaaattttga-aaaatgacataattcaatgtaataaca 28170427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 43942326 - 43942366
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  43942326 caccaataatgatttgagaaaataacataattcaatgtaat 43942366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 34201099 - 34201063
Alignment:
Q  191 aataacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||| |||||||||||||||||||||||||||||||    
T  34201099 aataataatttgagaaaatgacataattcaatgtaat 34201063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 37225800 - 37225760
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  37225800 caccaataataatttgagaaaataacataattcaatgtaat 37225760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 40063953 - 40063993
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  40063953 caccaataataatttgagaaaatgacataattcattgtaat 40063993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 1433357 - 1433392
Alignment:
Q  197 aatttgagaaaatgacataattcaatgtaataacat 232  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1433357 aatttgagaaaatgacataatccaatgtaataacat 1433392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 1639504 - 1639535
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaataac 230  Q
    ||||||||||||||||||||||||||||||||    
T  1639504 tttgagaaaatgacataattcaatgtaataac 1639535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 14227224 - 14227263
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaa 226  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  14227224 caccaataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 14740733 - 14740772
Alignment:
Q  188 accaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  14740733 accaataataatgtgagaaaatgacataattcaatgtaat 14740772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 10441215 - 10441245
Alignment:
Q  197 aatttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||||    
T  10441215 aatttgagaaaatgacataattcaatgtaat 10441245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 29198526 - 29198496
Alignment:
Q  197 aatttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||||    
T  29198526 aatttgagaaaatgacataattcaatgtaat 29198496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 42874530 - 42874564
Alignment:
Q  193 taacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||| |||||||||||||||||||||||||||||    
T  42874530 taacattttgagaaaatgacataattcaatgtaat 42874564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 12985394 - 12985434
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  12985394 cacctataataatttgagaaaatcacataattcaatgtaat 12985434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 31119101 - 31119129
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||    
T  31119101 tttgagaaaatgacataattcaatgtaat 31119129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 4859170 - 4859130
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  4859170 caccaataataatttgagaaaatgacataatccaatgtaat 4859130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 10157996 - 10158031
Alignment:
Q  197 aatttgagaaaatgacataattcaatgtaataacat 232  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10157996 aatttgagaaaatgacataattcaatgtaatcacat 10158031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 2140533 - 2140499
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaa 226  Q
    |||| ||||||||||||||||||||||||||||||    
T  2140533 ataataatttgagaaaatgacataattcaatgtaa 2140499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 9024223 - 9024193
Alignment:
Q  197 aatttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||||    
T  9024223 aatttgagaaaatgacataattcaatgtaat 9024193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 33076414 - 33076451
Alignment:
Q  191 aataacaatttgagaaaatgacataattcaatgtaata 228  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  33076414 aataataatttgagaaaatgacataattgaatgtaata 33076451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 1893426 - 1893390
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatg 223  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  1893426 caccaataataatttgagaaaatgatataattcaatg 1893390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 6284717 - 6284665
Alignment:
Q  188 accaataacaatttgagaaaatgacataattcaatgtaataacatttgttagt 240  Q
    |||| ||| |||||||||||||||||||||| ||| |||| |||| |||||||    
T  6284717 accattaataatttgagaaaatgacataattgaatttaatcacatgtgttagt 6284665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 6751927 - 6751899
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||    
T  6751927 tttgagaaaatgacataattcaatgtaat 6751899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 10031584 - 10031612
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||    
T  10031584 tttgagaaaatgacataattcaatgtaat 10031612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 19369831 - 19369859
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||    
T  19369831 tttgagaaaatgacataattcaatgtaat 19369859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 29049891 - 29049927
Alignment:
Q  191 aataacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  29049891 aataataatttgagaaaattacataattcaatgtaat 29049927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 29959189 - 29959217
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||    
T  29959189 tttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 32444768 - 32444808
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||| |||||||||||||| ||||||||||||||||||||    
T  32444768 caccattaacaatttgagaagatgacataattcaatgtaat 32444808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 9449471 - 9449510
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaa 226  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  9449471 caccaataataatttgagaaaatcacataattcaatgtaa 9449510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 11108511 - 11108554
Alignment:
Q  193 taacaatttgagaaaatgacataattcaatgtaataacatttgt 236  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||    
T  11108511 taacaatttgagaaaatgaaataattcaatgtaaccacatttgt 11108554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 11596507 - 11596472
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||||||||||||||||||||||||||||||    
T  11596507 ataataatttgagaaaatgacataattcaatgtaat 11596472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 28296330 - 28296368
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgta 225  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  28296330 caccgataataatttgagaaaatgacataattcaatgta 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 39424643 - 39424681
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgta 225  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  39424643 caccaataataatttgagaaaatgacatgattcaatgta 39424681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 41558701 - 41558671
Alignment:
Q  197 aatttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaat 41558671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 43208321 - 43208291
Alignment:
Q  197 aatttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||||    
T  43208321 aatttgagaaaatgacataattcaatgtaat 43208291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 9489806 - 9489773
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattca 220  Q
    ||||||||||||||||||||||| ||||||||||    
T  9489806 caccaataacaatttgagaaaataacataattca 9489773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 30080546 - 30080518
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||    
T  30080546 tttgagaaaatgacataattcaatgtaat 30080518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 38749620 - 38749580
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||| ||||||| |||||||||||||||||||||||    
T  38749620 caccgataataatttgaaaaaatgacataattcaatgtaat 38749580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 18570974 - 18571014
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  18570974 caccgataataatttgagaaaatgacataattcaatgtaat 18571014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 26787855 - 26787815
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  26787855 caccaataaaaatttgagaaaatgacataattcgatgtaat 26787815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 40681984 - 40682024
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  40681984 caccgataataatttgagaaaatgacataattcaatgtaat 40682024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 44605194 - 44605151
Alignment:
Q  189 ccaataacaatttgagaaaatgacataattcaatgtaataacat 232  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||||    
T  44605194 ccaataataatttgagaaaataacataattcaatgtaattacat 44605151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 30563416 - 30563450
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaa 226  Q
    |||| ||||||||||||||||||||||||||||||    
T  30563416 ataataatttgagaaaatgacataattcaatgtaa 30563450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 19613665 - 19613616
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaataacatttgttagta 241  Q
    |||| ||||||||||||| ||||||||||||||||| | || ||||||||    
T  19613665 ataataatttgagaaaataacataattcaatgtaatgatatgtgttagta 19613616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 6180914 - 6180882
Alignment:
Q  195 acaatttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||| ||||||||||||    
T  6180914 acaatttgagaaaatgacatgattcaatgtaat 6180882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 10535816 - 10535776
Alignment:
Q  187 caccaataacaatttgagaaaatgacataattcaatgtaat 227  Q
    |||| |||| |||||||||||||||||||||||| ||||||    
T  10535816 caccgataataatttgagaaaatgacataattcagtgtaat 10535776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 43586050 - 43586022
Alignment:
Q  199 tttgagaaaatgacataattcaatgtaat 227  Q
    |||||||||||||||||||||||||||||    
T  43586050 tttgagaaaatgacataattcaatgtaat 43586022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 7697 - 7743
Alignment:
Q  192 ataacaatttgagaaaatgacataattcaatgtaataacatttgtta 238  Q
    |||| ||||||||||||||||||||||||||| ||| |||| |||||    
T  7697 ataataatttgagaaaatgacataattcaatgcaatcacatatgtta 7743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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