View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10172_7 (Length: 364)

Name: NF10172_7
Description: NF10172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10172_7
NF10172_7
[»] chr4 (3 HSPs)
chr4 (1-345)||(14457765-14458109)
chr4 (1-337)||(14493241-14493577)
chr4 (24-345)||(14468846-14469167)
[»] scaffold0221 (2 HSPs)
scaffold0221 (294-345)||(10113-10164)
scaffold0221 (1-40)||(10164-10203)


Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 14458109 - 14457765
Alignment:
Q  1 aagacaagcttgaaggaattggtccagaaagttggttgtttgagagatcaagagatgataattgaagcagatttgacatggtttcgtgaatttggccagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14458109 aagacaagcttgaaggaattggtccagaaagttggttgtttgagagatcaagagatgataattgaagcagatttgacatggtttcgtgaatttggccagt 14458010  T
Q  101 tatatggtttcttgacaagttgagaacaactaaaccggatagttttgttatttcattgggaatattcccagtgaagttgttatcagaaaggtctatgcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14458009 tatatggtttcttgacaagttgagaacaactaaaccggatagttttgttatttcattgggaatattcccagtgaagttgttatcagaaaggtctatgcta 14457910  T
Q  201 gtaacaagggaaagagtcgtggtatacgttaacatttggtctttcgtagacacatccaagctttcttcatagtagtgttcttcaaattttccatacagta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14457909 gtaacaagggaaagagtcgtggtatacgttaacatttggtctttcgtagacacatccaagctttcttcatagtagtgttcttcaaattttccatacagta 14457810  T
Q  301 aatatttatttttcttctccacttgggctattgctttcagatcac 345  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  14457809 aatatttatttttcttctccacttgggctattgctctcagatcac 14457765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 14493241 - 14493577
Alignment:
Q  1 aagacaagcttgaaggaattggtccagaaagttggttgtttgagagatcaagagatgataattgaagcagatttgacatggtttcgtgaatttggccagt 100  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||   ||||||| ||| |    
T  14493241 aagacaagcttgaaggaattgttccggaaagttggttgtttgagagatcaagggatgataattgaagcagatttgaaatggttttaggaatttgaccact 14493340  T
Q  101 tatatggtttcttgacaagttgagaacaactaaaccggatagttttgttatttcattgggaatattcccagtgaagttgttatcagaaaggtctatgcta 200  Q
    ||||||||||||||||||||||||||| || |||||  ||||||||||||| ||||| |||||||| ||| ||||||| |||| |||||||||||||||     
T  14493341 tatatggtttcttgacaagttgagaaccaccaaaccaaatagttttgttatctcatttggaatatttccactgaagttattattagaaaggtctatgctt 14493440  T
Q  201 gtaacaagggaaagagtcgtggtatacgttaacatttggtctttcgtagacacatccaagctttcttcatagtagtgttcttcaaattttccatacagta 300  Q
    |||||||||||||| ||| |||||||  ||| |||||||| ||||  | | |||| ||| | ||||||||| || ||  |   | ||| |||||||| ||    
T  14493441 gtaacaagggaaagggtcttggtatattttagcatttggtttttcacatagacattcaatccttcttcataataatgaccacgatattctccatacaata 14493540  T
Q  301 aatatttatttttcttctccacttgggctattgcttt 337  Q
    | |||||||||||||||  ||||| ||||||||||||    
T  14493541 agtatttatttttcttccgcacttcggctattgcttt 14493577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 24 - 345
Target Start/End: Original strand, 14468846 - 14469167
Alignment:
Q  24 ccagaaagttggttgtttgagagatcaagagatgataattgaagcagatttgacatggtttcgtgaatttggccagttatatggtttcttgacaagttga 123  Q
    ||||||||| ||||| | |||||||||||||||  || |||| |||||||||||||||||||  |||||| |||||||||||||||||||||||||||||    
T  14468846 ccagaaagtcggttgctcgagagatcaagagattctagttgatgcagatttgacatggtttcaggaattttgccagttatatggtttcttgacaagttga 14468945  T
Q  124 gaacaactaaaccggatagttttgttatttcattgggaatattcccagtgaagttgttatcagaaaggtctatgctagtaacaagggaaagagtcgtggt 223  Q
    |||  |  ||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  14468946 gaatcatcaaaccagatagttttgttatttcattgggaatatttccaatgaagttgttatgagaaaggtctatgccagtaacaagggaaagagtcttggt 14469045  T
Q  224 atacgttaacatttggtctttcgtagacacatccaagctttcttcatagtagtgttcttcaaattttccatacagtaaatatttatttttcttctccact 323  Q
    ||||  ||   || |||||||  || |||||| ||| |||||||  |||||||| |||||| | | |||||| ||||| ||||||||||||||||   ||    
T  14469046 atactctactcttcggtcttttatatacacattcaaactttctttgtagtagtgatcttcagaatctccatagagtaagtatttatttttcttctgtgct 14469145  T
Q  324 tgggctattgctttcagatcac 345  Q
    |||||||| ||||||| |||||    
T  14469146 tgggctatagctttcaaatcac 14469167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 10164 - 10113
Alignment:
Q  294 tacagtaaatatttatttttcttctccacttgggctattgctttcagatcac 345  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  10164 tacagtaagtatttatttttcttctgcacttgggctattgctttcagatcac 10113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10203 - 10164
Alignment:
Q  1 aagacaagcttgaaggaattggtccagaaagttggttgtt 40  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  10203 aagacaagcttgaaggaattgttccagaaagttggttgtt 10164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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