View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10172_low_2 (Length: 409)
Name: NF10172_low_2
Description: NF10172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10172_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 4 - 394
Target Start/End: Complemental strand, 26305216 - 26304830
Alignment:
| Q |
4 |
ggagaagcagagaggacaccttaatgcatagatccaatatccttacctcacaaacttgagatcttcaataaatttataaactatatatatacattccaca |
103 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26305216 |
ggagaaactgagaggacacctccatgcatagatccaatatccttacctcacaaacttgagatactcaataaatttataaactatatatatacattccaca |
26305117 |
T |
|
| Q |
104 |
tgcatgtgaccaaggactgtaatctttgtgctgcctattcacatcttgtgttgggtatgctttcaataaatttatatagttgtttcnnnnnnnnnnnnnn |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
26305116 |
tgcatgtgaccaaggactgtaatctttgtgctgcctattcacatcttgtgttgggtatgctttcaataaattta----gtagtttcaaaaacaaaacaaa |
26305021 |
T |
|
| Q |
204 |
nntgcatgtggccaagtgtatatgtaataatgatttccaacaaattttaagagaagaaacttgtttgttattatcatatgttgaagctgctttcttatat |
303 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26305020 |
aatgcatgtggccaattgtatatgtaataatgatttccaacaaattttaagggaagaaacttgtttgttattatcatatgttgaagctgctttcttatat |
26304921 |
T |
|
| Q |
304 |
accattatgcatgtgtgtgtattcccacataagttgttttctacaatgcacaatgtggatgatgcaatttgtaccattaattgaagtgact |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26304920 |
accattatgcatgtgtgtgtattcccacataagttgttttctacaatacacaatgtggatgatgcaatttgtaccattaattgaagtgact |
26304830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University