View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10172_low_4 (Length: 352)
Name: NF10172_low_4
Description: NF10172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10172_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 47947383 - 47947061
Alignment:
| Q |
17 |
actttactagttgtttcttagttataatattatatacatgattaaacatgcctaatcctctttctatatgttatggtttaggttaatccaaagttgtatg |
116 |
Q |
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| T |
47947383 |
actttactagttgtttcttagttataatattatatacatgattaaacatgcctaatcctctttctatatgttatggtttaggttaatccaaagttgtatg |
47947284 |
T |
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| Q |
117 |
gtgaccacaactcccgattgtttgccgcttggactgtaagttcctatttattgaaagctataatcttatagtagttgnnnnnnnataaccacaaatccat |
216 |
Q |
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| T |
47947283 |
gtgaccacaactcccgattgtttgccgcttggactataagttcctatttattgaaagc--taatcttatagtagttgtttttttataaccacaaatccat |
47947186 |
T |
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| Q |
217 |
atattgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggtt |
316 |
Q |
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| T |
47947185 |
atattgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggtt |
47947086 |
T |
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| Q |
317 |
ctaccgtaggaccttattcatctca |
341 |
Q |
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| T |
47947085 |
ctaccgtaggaccttattcatctca |
47947061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 47941371 - 47941275
Alignment:
| Q |
62 |
acatgcctaatcctctttctatatgttatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagttc |
159 |
Q |
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| T |
47941371 |
acatgcctaatgctctctctatatgttatggtt-aggttaatccgaagttgtatggtgaccacaactcccgattgtttaccgcttggactgtaagttc |
47941275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 336
Target Start/End: Complemental strand, 47941135 - 47941019
Alignment:
| Q |
220 |
ttgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggttcta |
319 |
Q |
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| T |
47941135 |
ttgattgcggtgcagaaagattcataccagtcaacaggttgctttgatcttacctgtagtggttttgtgcaaatagccacagagtttgcacttggttcta |
47941036 |
T |
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| Q |
320 |
ccgtaggaccttattca |
336 |
Q |
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| || | |||||||||| |
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| T |
47941035 |
cagtggaaccttattca |
47941019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 47928778 - 47928708
Alignment:
| Q |
88 |
tatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagtt |
158 |
Q |
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| T |
47928778 |
tatggtttaggttaatccaaagttgtatggtgaccacaacacccgcttgttcacctattggactgtaagtt |
47928708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 47920675 - 47920583
Alignment:
| Q |
81 |
tatatgttatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagttcctatttattgaaag |
173 |
Q |
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| T |
47920675 |
tatatgttatggttcaggttaatccaaagttgtatggtgaccataatacccgtttcttcgtctattggactgtaagttctcatttattgaaag |
47920583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 47909690 - 47909616
Alignment:
| Q |
218 |
tattgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaa |
292 |
Q |
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| T |
47909690 |
tattgattgtggtgcagaaagatacatacaagtcaacaggttgctttgatcttacttgcaagggttttgtgcaaa |
47909616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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