View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10173_high_3 (Length: 290)
Name: NF10173_high_3
Description: NF10173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10173_high_3 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 47711996 - 47711707
Alignment:
| Q |
1 |
cagggtctggcaatttctatttgaagaatctacatattcaaatgcatcattatcagatgagaaagatgaaactcttgatgatagaatatcacgggcatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47711996 |
cagggtctggcaatttctatttgaagaatctacatattcaaatgcatcattatcagatgagaaagatgaaactcttgatgatagaatatcacaggcatca |
47711897 |
T |
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| Q |
101 |
aaaaagacattgtcatcttcatctgtttcttcctctgcccaatcatttctctcattatcatcctcagattcacttgcacttccttctgaattaaaaatag |
200 |
Q |
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| T |
47711896 |
aaaaagacattgtcatcttcatctgtttcttcctctgccacatcatttctctcattatcatcctcagattcacttgcacttccttctgaattaaaaatag |
47711797 |
T |
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| Q |
201 |
aaatatagtcatctctgataactaagccagcccctagaagagcaatagaagtaatgaccatgatcaaaattgatgtccatctcattgcaa |
290 |
Q |
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| T |
47711796 |
aaatatagtcatctctgataactaagccagcccctagaagagcaatagaagtaatgaccatgatcaaaattggtgtccatttcatagcaa |
47711707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 32885582 - 32885453
Alignment:
| Q |
74 |
cttgatgatagaatatcacgggcatcaaaaaagacattgtcatcttcatctgtttcttcctctgcccaatcatttctctcattatcatcctcagattcac |
173 |
Q |
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| T |
32885582 |
cttgatgatagaatatcacgggtatcaaaaaagacattgtcatcgtcatctgtttcttcctctgccacatcatttctctcattatcatcctcagattcac |
32885483 |
T |
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| Q |
174 |
ttgcacttccttctgaattaaaaatagaaa |
203 |
Q |
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| T |
32885482 |
ttgcacttccttctgaattaaaaatagaaa |
32885453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 32885650 - 32885611
Alignment:
| Q |
36 |
attcaaatgcatcattatcagatgagaaagatgaaactct |
75 |
Q |
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| T |
32885650 |
attcaaatgcatcattatcagatgagaaagatgatactct |
32885611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 45603803 - 45603715
Alignment:
| Q |
202 |
aatatagtcatctctgataactaagccagcccctagaagagcaatagaagtaatgaccatgatcaaaattgatgtccatctcattgcaa |
290 |
Q |
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| T |
45603803 |
aatatagtcatctgtgaggactaaaccagcccctagaagagcaatagatgtaatgaccatgatcaaaattggtgtccatttcatagcaa |
45603715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 24481296 - 24481169
Alignment:
| Q |
76 |
tgatgatagaatatcacgggcatcaaaaaagacattgtcatcttcatctgtttcttcctctgcccaatcatttctctcattatcatcctcagattcactt |
175 |
Q |
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|||||||| || |||||||| ||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
24481296 |
tgatgatataaaatcacgggtgtcaaaaaagggggtatcatcatcatctgtttcttcctctgctgcatcatttctctcattatcatcctcagacccactt |
24481197 |
T |
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| Q |
176 |
gcacttccttctgaattaaaaatagaaa |
203 |
Q |
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||||| | |||| ||||||||| |||| |
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| T |
24481196 |
gcactaacctctggattaaaaattgaaa |
24481169 |
T |
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