View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10173_low_10 (Length: 292)
Name: NF10173_low_10
Description: NF10173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10173_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 34016142 - 34015858
Alignment:
| Q |
1 |
aactcaaagtcaacctatgcctataccttctccaagccaattgaattgccacagcagcccaagttctccaaccaggtgagtaatatctaacacttcttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016142 |
aactcaaagtcaacctatgcctataccttctccaagccaattgaattgccacagcagcccaagttctccaaccaggtgagtaatatctaacacttcttct |
34016043 |
T |
|
| Q |
101 |
aacattttcttttgcaaatgtgtacctaaaatttgggcacacttgtttgttacgaattataaaaagttatcatcgcacgtacaaaaattgttgtaaacag |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016042 |
aacattttcttttgcaaatgtgtacctaaaattagggcacacttgtttgttacgaattataaaaagttatcatcgcacgtacaaaaattgttgtaaacag |
34015943 |
T |
|
| Q |
201 |
gcacttggtaatacttcgcactaataatatgattnnnnnnntaagtacctaaaattttgcgtcacatatttgacatcctatgcttc |
286 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34015942 |
acacttggtaatacttcgcactaataatatgatt-aaaaaataagtacctaaaattttgcgtcacatatttgacatcctctgcttc |
34015858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 22852188 - 22852058
Alignment:
| Q |
4 |
tcaaagtcaacctatgcctataccttctccaagccaattgaattgccacagcagcccaagttctccaaccaggtgagtaatatctaacacttcttctaac |
103 |
Q |
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||||||| |||||||| || ||||||||||| |||||||| || ||||||||| ||||||||||||| || ||||||||||| ||| ||||||| | || |
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| T |
22852188 |
tcaaagttaacctatgtctgtaccttctccatgccaattgtatggccacagcaccccaagttctccaccctggtgagtaatacctagcacttctcttcac |
22852089 |
T |
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| Q |
104 |
attttcttttgcaaatgtgtacctaaaattt |
134 |
Q |
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||||| || |||| |||||||||| |||| |
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| T |
22852088 |
cttttccttcacaaacgtgtacctaacattt |
22852058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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