View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10173_low_16 (Length: 250)
Name: NF10173_low_16
Description: NF10173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10173_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 47712085 - 47712325
Alignment:
| Q |
1 |
ttactttaatgagctttgaagaaatggagtgctcatatgtgcttgaccaagcatatgaatggggaaaaagggtaagtcatatttggctgacagatttata |
100 |
Q |
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| T |
47712085 |
ttactttaatgagctttgaagaaatggagtgctcatatgtgcttgaccaagcatatgaatggggaaaaagggtaagtcatatttggctgacagatttata |
47712184 |
T |
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| Q |
101 |
ttaaggaagaaaatatgggcacttcaatatgatctaagaaaactatttgataaaatattgtgcgatgttgatttttgtttactattagctctttcaatgc |
200 |
Q |
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| T |
47712185 |
ttaaggaa---aatatgggcacttcaatatgatctaagaaaactatttgataaaatattgtgcgatgttgatttttgtttactattagctctttcaatgc |
47712281 |
T |
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| Q |
201 |
tgtattggtgtgctcttcccttttactggatctgcctttgcttc |
244 |
Q |
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| T |
47712282 |
tgtattggtgtgctcttcccttttgctgtatctgcctatgcttc |
47712325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 32885852 - 32886074
Alignment:
| Q |
13 |
gctttgaagaaatggagtgctcatatgtgcttgaccaagcatatgaatggggaaaaagggtaagtcatatttggctgacagatttatatt---------- |
102 |
Q |
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| T |
32885852 |
gctttgaagaaatggagtactcatatctgcttgaccaagcatatgaatggggaaaaagggtaagtcagatttggctgacagatttatattgctcttccat |
32885951 |
T |
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| Q |
103 |
aaggaagaaaatatgggcacttcaatatgatctaagaaaactatttgataaaatattgtgcgatgttgatttttgttta-ctattagctctttcaatgct |
201 |
Q |
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| T |
32885952 |
attaaggaaaatatgggcacttcaatatgatctaagaaaactatttgataaaatattgcgcgatgttgatttttgtttacctattagctctttcaatgga |
32886051 |
T |
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| Q |
202 |
gtattggtgtgctcttccctttt |
224 |
Q |
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| T |
32886052 |
gtattggtgtgctcttccctttt |
32886074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 24481563 - 24481624
Alignment:
| Q |
17 |
tgaagaaatggagtgctcatatgtgcttgaccaagcatatgaatggggaaaaagggtaagtc |
78 |
Q |
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| T |
24481563 |
tgaagaaatggagtactcatatctccttgaccgagcttatgaatggggaaaaagagtaagtc |
24481624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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