View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10173_low_3 (Length: 527)

Name: NF10173_low_3
Description: NF10173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10173_low_3
NF10173_low_3
[»] chr1 (4 HSPs)
chr1 (287-517)||(8151917-8152146)
chr1 (169-286)||(27242694-27242810)
chr1 (27-104)||(27242550-27242627)
chr1 (441-517)||(52240764-52240840)
[»] chr7 (5 HSPs)
chr7 (169-286)||(9356665-9356785)
chr7 (27-104)||(9356521-9356598)
chr7 (27-104)||(46072098-46072176)
chr7 (429-506)||(22382416-22382493)
chr7 (27-94)||(38515381-38515448)
[»] chr8 (6 HSPs)
chr8 (172-286)||(28395622-28395734)
chr8 (169-286)||(9600126-9600246)
chr8 (27-104)||(9599982-9600059)
chr8 (27-104)||(28395448-28395525)
chr8 (429-506)||(13795151-13795228)
chr8 (169-197)||(28395592-28395620)
[»] chr3 (9 HSPs)
chr3 (169-287)||(44052748-44052869)
chr3 (169-286)||(54536947-54537068)
chr3 (169-286)||(44351994-44352114)
chr3 (27-104)||(18323370-18323447)
chr3 (27-104)||(20553226-20553303)
chr3 (27-104)||(44352181-44352258)
chr3 (27-104)||(54536803-54536880)
chr3 (27-104)||(44052604-44052681)
chr3 (255-286)||(18321814-18321845)
[»] chr4 (4 HSPs)
chr4 (27-104)||(20614702-20614779)
chr4 (27-104)||(17625117-17625194)
chr4 (210-286)||(17626794-17626868)
chr4 (460-517)||(45002244-45002300)
[»] chr5 (2 HSPs)
chr5 (30-104)||(9370874-9370948)
chr5 (27-67)||(39082201-39082241)
[»] chr2 (4 HSPs)
chr2 (19-104)||(1194975-1195061)
chr2 (27-104)||(1285308-1285385)
chr2 (196-286)||(1288643-1288733)
chr2 (196-286)||(1198250-1198338)
[»] chr6 (3 HSPs)
chr6 (27-104)||(15599468-15599545)
chr6 (442-510)||(6876626-6876693)
chr6 (429-493)||(10329135-10329199)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 287 - 517
Target Start/End: Complemental strand, 8152146 - 8151917
Alignment:
Q  287 tctactactaataccactacttaaatttttggtatcacgtcaagtgtgtgagaatcatgattagcatagtttttaaaagttacattatgtaatttttata 386  Q
    |||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8152146 tctactactagtactactacttaaatttttggtatgacgttaagtgtgtgagaatcatgattagcatagtttttaaaagttacattatgtaatttttata 8152047  T
Q  387 acattatggtagggtggaagtgcagtaagtcactttcgacgaaaaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcat 486  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8152046 acattatggtagggtggaagtgctgtaagtcactttcgacga-aaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcat 8151948  T
Q  487 cataaagttttgcgtctaccgtctctgcttc 517  Q
    |||||||||| ||||||||||||| ||||||    
T  8151947 cataaagtttcgcgtctaccgtctttgcttc 8151917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 27242694 - 27242810
Alignment:
Q  169 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctc 268  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||    
T  27242694 cagacaaaaataatcaggggaattcaagggtactatagtaattttcagtatacaaattt-tttttttttattggggggtgccacagcacctgggggtctc 27242792  T
Q  269 aatagagatccgcccctg 286  Q
    ||||||||||||||||||    
T  27242793 aatagagatccgcccctg 27242810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 27242550 - 27242627
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  27242550 tatacaatttcatccaaaaaatatcaccgcaatagctcaaacacgagactaaagcttaaaatatactatataccaact 27242627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 441 - 517
Target Start/End: Original strand, 52240764 - 52240840
Alignment:
Q  441 aattgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtctctgcttc 517  Q
    |||||||||| |||||   |||||||||||| |||||||||||||||||||||| | ||||||||| ||| ||||||    
T  52240764 aattgtaaagctgtatcaggaagtgttgaacccatgttgtaagcatcataaagtctcgcgtctaccatctttgcttc 52240840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 9356665 - 9356785
Alignment:
Q  169 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaatt---tatttatttttagtggggggtgccacaacacctgggggt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||| |||||||||||||| |||||||||||    
T  9356665 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaattttatttttatttttattggggggtgccacagcacctgggggt 9356764  T
Q  266 ctcaatagagatccgcccctg 286  Q
    |||||||||||||||||||||    
T  9356765 ctcaatagagatccgcccctg 9356785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 9356521 - 9356598
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9356521 tatacaatttcatccaaaaaatatcatcgcaatagctcaaacacgagactaaagcttaaaatatactatatatcaact 9356598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 46072176 - 46072098
Alignment:
Q  27 tatacaattttatccaaaaaatt-tcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46072176 tatacaatttcatccaaaaaaatatcactgcaatagctcaaacacgagactaaagctccaaatatactatataccaact 46072098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 429 - 506
Target Start/End: Complemental strand, 22382493 - 22382416
Alignment:
Q  429 aaaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctacc 506  Q
    ||||||| |||  ||||||||| ||| ||  |||||||||||||||| |||||||||||||||||  | |||||||||    
T  22382493 aaaaatagtgtacattgtaaagctgtgtgaggaagtgttgaactcatattgtaagcatcataaagcatcgcgtctacc 22382416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 38515381 - 38515448
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatacta 94  Q
    |||||||||| ||| ||||||| ||||||||| | ||| ||||| | ||| |||||||||||||||||    
T  38515381 tatacaatttcatcaaaaaaatatcaccgcaacaactctaacacaaaactgaagctccaaatatacta 38515448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 172 - 286
Target Start/End: Original strand, 28395622 - 28395734
Alignment:
Q  172 acaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctcaat 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||| |||||||||||||||||    
T  28395622 acaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaatt--tttttttttattggggggtgccacagcacctgggggtctcaat 28395719  T
Q  272 agagatccgcccctg 286  Q
    |||||||||||||||    
T  28395720 agagatccgcccctg 28395734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 9600126 - 9600246
Alignment:
Q  169 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaa-tttattt--atttttagtggggggtgccacaacacctgggggt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||| ||||||||||||||||||||| ||||    
T  9600126 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaattttattttattttttattggggggtgccacaacacctgagggt 9600225  T
Q  266 ctcaatagagatccgcccctg 286  Q
    |||||||||||||||||||||    
T  9600226 ctcaatagagatccgcccctg 9600246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 9599982 - 9600059
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  9599982 tatacaatttcatccaaaaaatatcactgcaatagctcaaacacgagactaaagcttaaaatatactatataccaact 9600059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 28395448 - 28395525
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  28395448 tatacaatttcatccaaaaaatatcactgcaatagctcaaacacgagactaaagcttaaaatatactatataccaact 28395525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 506
Target Start/End: Complemental strand, 13795228 - 13795151
Alignment:
Q  429 aaaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctacc 506  Q
    ||||||| || | ||||||||| ||||| | |||||||||||||||||||||||| |||||||||  | |||||||||    
T  13795228 aaaaatagtgcgcattgtaaagatgtatagggaagtgttgaactcatgttgtaagtatcataaagcctcgcgtctacc 13795151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 28395592 - 28395620
Alignment:
Q  169 cagacaaaaacaatcaggggaattcaagg 197  Q
    |||||||||||||||||||||||||||||    
T  28395592 cagacaaaaacaatcaggggaattcaagg 28395620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 169 - 287
Target Start/End: Original strand, 44052748 - 44052869
Alignment:
Q  169 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaa---tttatttatttttagtggggggtgccacaacacctgggggt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||| |||||| |||||||||||||| |||||||||||    
T  44052748 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaattttttttttttttttattggggggtgccacagcacctgggggt 44052847  T
Q  266 ctcaatagagatccgcccctgt 287  Q
    ||||||||||||||||||||||    
T  44052848 ctcaatagagatccgcccctgt 44052869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 54536947 - 54537068
Alignment:
Q  169 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaa--tttatttatttttagtggggggtgccaca--acacctggggg 264  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||||||||  || ||||||||    
T  54536947 cagacaaaaacaatcagggaaattcaagggtactatagtaattttcagtatacaaatttttatttttttttattggggggtgccacagcacccctggggg 54537046  T
Q  265 tctcaatagagatccgcccctg 286  Q
    ||||||||||||||||||||||    
T  54537047 tctcaatagagatccgcccctg 54537068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 169 - 286
Target Start/End: Complemental strand, 44352114 - 44351994
Alignment:
Q  169 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaa--tttatttatttttagt-ggggggtgccacaacacctgggggt 265  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||||| | ||||||||||||| |||||||||||    
T  44352114 cagacaaaaacaatcaggggaattcaagggtactatggtaattttcagtatacaaatttttttttttttttattgggggggtgccacagcacctgggggt 44352015  T
Q  266 ctcaatagagatccgcccctg 286  Q
    |||||||||||||||||||||    
T  44352014 ctcaatagagatccgcccctg 44351994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 18323447 - 18323370
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18323447 tatacaatttcatccaaaaaatatcaccgcaatagctcaaacacgagactaaagctccaaatatactatataccaact 18323370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 20553226 - 20553303
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20553226 tatacaatttcattcaaaaaatatcaccgcaatagctcaaacacgagactaaagctccaaatatactatataccaact 20553303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 44352258 - 44352181
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  44352258 tatacaatttcatccaaaaaatatcaccgcaatagctcaaacacgagactaaagcttaaaatatactatataccaact 44352181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 54536803 - 54536880
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  54536803 tatacaatttcatccaaaaaatatcaccgcaatagctcaaacacgagactaaagcttaaaatatactatataccaact 54536880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 44052604 - 44052681
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||  |||||||||||||| |||||    
T  44052604 tatacaatttcatccaaaaaatatcaccgcaatagctcaaacacgagactaaaacttaaaatatactatataccaact 44052681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 286
Target Start/End: Complemental strand, 18321845 - 18321814
Alignment:
Q  255 cacctgggggtctcaatagagatccgcccctg 286  Q
    ||||||||||||||||||||||||||||||||    
T  18321845 cacctgggggtctcaatagagatccgcccctg 18321814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 20614702 - 20614779
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20614702 tatacaatttcatccaaaaaatatcaccgcaatagctcaaacacgagactaaagctccaaatatactatataccaact 20614779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 17625117 - 17625194
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  17625117 tatacaatttcatccaaaaaatatcaccgcaatagctcaaacacgagattaaagctccaaatctactatatatcaact 17625194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 17626794 - 17626868
Alignment:
Q  210 ttttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 286  Q
    |||||||||| ||||||| |||  ||||| | |||||||||||   |||||||||||||||||||||||||||||||    
T  17626794 ttttcagtattcaaattttttt--ttttattagggggtgccacggaacctgggggtctcaatagagatccgcccctg 17626868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 517
Target Start/End: Complemental strand, 45002300 - 45002244
Alignment:
Q  460 gaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtctctgcttc 517  Q
    ||||||||||||  |||||||||||||||||||| || ||||||||| ||| ||||||    
T  45002300 gaagtgttgaacctatgttgtaagcatcataaag-ttcgcgtctaccatctttgcttc 45002244  T

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Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 9370948 - 9370874
Alignment:
Q  30 acaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9370948 acaatttcatccaaaaaatatcaccgcaatagctcaaacacgagactaaagctccaaatatactatataccaact 9370874  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 39082201 - 39082241
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaa 67  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  39082201 tatacaatttcatccaaaaaatatcaccgcaatagctcaaa 39082241  T

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Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 1194975 - 1195061
Alignment:
Q  19 ataaaagttatacaatttt-atccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1194975 ataaaagttatataaatttcatccaaaaaatatcaccgcaatagctcaaacacgagactaaagctccaaatatactatataccaact 1195061  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 1285308 - 1285385
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  1285308 tatacaatttcatccaaaaaatatcaccgcaataactcaaacacgagactaaagctccaaatatactatataccaact 1285385  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 1288643 - 1288733
Alignment:
Q  196 gggtactatagtaattttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 286  Q
    ||||||||||||| |||||||||||||||||  | | |||||| | |||||||||||  ||||||||||||||||||||||||||||||||    
T  1288643 gggtactatagtagttttcagtatacaaattattatttttttactagggggtgccacggcacctgggggtctcaatagagatccgcccctg 1288733  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 1198250 - 1198338
Alignment:
Q  196 gggtactatagtaattttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 286  Q
    |||||| |||||| ||||||| |||||||||| |||  ||||| |  ||| ||||||  |||||||||||||||||||||||||| |||||    
T  1198250 gggtacgatagtagttttcagcatacaaattttttt--ttttactaagggatgccacggcacctgggggtctcaatagagatccgtccctg 1198338  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 15599545 - 15599468
Alignment:
Q  27 tatacaattttatccaaaaaatttcaccgcaatagctcaaacacgagactaaagctccaaatatactatatatcaact 104  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  15599545 tatacaatttcatccaaaaaatatcaccgcaatagctcagacacgagactaaagctccaaatatactatataccaact 15599468  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 510
Target Start/End: Original strand, 6876626 - 6876693
Alignment:
Q  442 attgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtct 510  Q
    ||||| ||||||||||| || || |||||||||||||||||||||||||||   | |||||||||||||    
T  6876626 attgtcaagttgtatgggga-gtcttgaactcatgttgtaagcatcataaaacctcgcgtctaccgtct 6876693  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 493
Target Start/End: Original strand, 10329135 - 10329199
Alignment:
Q  429 aaaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaag 493  Q
    ||||||| || | ||||||||| ||| ||| |||||||| ||| |||||||||||||||||||||    
T  10329135 aaaaatagtgcgcattgtaaagatgtgtggggaagtgttaaacccatgttgtaagcatcataaag 10329199  T

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