View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10173_low_4 (Length: 442)
Name: NF10173_low_4
Description: NF10173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10173_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 380
Target Start/End: Original strand, 25563045 - 25563410
Alignment:
| Q |
7 |
gaattgaaacttggtgtggtagcatgatgataaagagtattgaatcaagaagaaacgtaaaaagcacggagaattgaagcaccaaatcaattataatatg |
106 |
Q |
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| T |
25563045 |
gaattgaaacttggtgtggaggcatgatgataaagagtattgaatcaagaagaaacgtaaaaagcacggagaattgaagcaccaagtcagttataatatg |
25563144 |
T |
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| Q |
107 |
agaaaaccaaagaatcttgttgaatatgcaagattataacagtaaaaatggatgaagattgttgaatatcaaagagaaatgatgaacaatgagtgcagca |
206 |
Q |
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| T |
25563145 |
agaaaaccaaagaatcttgttgaatatgcaagattataacagtaaaaatggatgaagattgttgaatatcaaagagaaatgatgaacaatgagtgcagca |
25563244 |
T |
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| Q |
207 |
aacaacgtttacaaattgtaaatttctatctctcgagaagcggaaaagtttgatgccatattatgagatacacaatgctgaatgaaagaagaattctcca |
306 |
Q |
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| T |
25563245 |
aacaacgtttacaaattgtaaatttctatctctcgagaagcggaaaagttagatgccatattatgagatacacaatgttgaatgaaagaagaattctcca |
25563344 |
T |
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| Q |
307 |
ttagttttgtatgaatgtttgtttagtatatactcctttagagtgataaaagtcctcatgataattaaagtgat |
380 |
Q |
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| T |
25563345 |
ttagttttgtatgaa----tgtttagtacata----tttagagtgataaaagtcctcatgataattaaagtgat |
25563410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 25563453 - 25563494
Alignment:
| Q |
388 |
taacttgctatgcaggtcttactaaaataagttatgtaacct |
429 |
Q |
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| T |
25563453 |
taacttgctatgcaggtctcactaaaagatgttatgtaacct |
25563494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 23777612 - 23777669
Alignment:
| Q |
265 |
tattatgagatacacaatgctgaatgaaagaagaattctccattagttttgtatgaat |
322 |
Q |
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| T |
23777612 |
tattatgagattcacgatagtgaatgaaagaagaattctccattagtttcatatgaat |
23777669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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