View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10173_low_6 (Length: 411)
Name: NF10173_low_6
Description: NF10173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10173_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 47485840 - 47485463
Alignment:
| Q |
19 |
ataacatccttatctgtttttctcacatgaatgatgtttaaattcttgtataaaattaaggcttttatgttgttttctgatatgatcatttcactattca |
118 |
Q |
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| T |
47485840 |
ataacatccttatctgtttttctcacatgaatgatgtttaaattcttgtataaaattaaggcttttatgctgttttctgatatgatcatttcactattca |
47485741 |
T |
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| Q |
119 |
ggctactcatcctcgcttccaagccgagaacttggacaagaacaaaaatttatatgatcgaattgaaagtcttgccaagaaacatgagtgcacttctgct |
218 |
Q |
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| T |
47485740 |
ggctactcatcctcgcttccaagccgagaacttggacaagaacaaaagtttatatgatcgaattgaaagtcttgccaagaaacatgagtgcgcttctgct |
47485641 |
T |
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| Q |
219 |
cagttagcattagcatggatactccaacaaggccatgatgttgtgcctatacctgtcgagtgacaactcaaaatagtatatcacacgaaacttaatacta |
318 |
Q |
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| T |
47485640 |
cagttagcattagcatggatactccaacaaggccatgatgttgtgcctattcctggtgagtgacaaatcaaaatagtatatcacaagaaacttaatacta |
47485541 |
T |
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| Q |
319 |
ctagctatgtatcctatcagtatcagaaacatcannnnnnncccccttatttttcaatctgcttaatatatttctatct |
397 |
Q |
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| T |
47485540 |
ctagctatgtatcctatcagtatcagaaatatgattttttt-ccccttatttgtcaatctgcataatatatttatatct |
47485463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 124 - 268
Target Start/End: Complemental strand, 47472996 - 47472852
Alignment:
| Q |
124 |
ctcatcctcgcttccaagccgagaacttggacaagaacaaaaatttatatgatcgaattgaaagtcttgccaagaaacatgagtgcacttctgctcagtt |
223 |
Q |
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| T |
47472996 |
ctcatccccgcttccaagctgagaacttgaacaagaacaaaaacatatatgataagatcgaaagtcttggcaaaaagcatgggtgcactcctgctcagtt |
47472897 |
T |
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| Q |
224 |
agcattagcatggatactccaacaaggccatgatgttgtgcctat |
268 |
Q |
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| T |
47472896 |
agcattagcatgggtactccaacaaggaaaggatgttgtgcctat |
47472852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 47476366 - 47476089
Alignment:
| Q |
23 |
catccttatctgttttt-ctcacatgaatgatgtttaaattcttgtataaaattaagg--ct---------------tttatgttgttttctgatatgat |
104 |
Q |
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| T |
47476366 |
catccttatctgttttttctcacatgaatgatgtttaaagtcttctataaaattaaggacctttcctttttaaaaaatttatgttgttttctg--atgat |
47476269 |
T |
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| Q |
105 |
catttcactattcaggctactcatcctcgcttccaagccgagaacttggacaagaacaaaaatttatatgatcgaattgaaagtcttgccaagaaacatg |
204 |
Q |
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| T |
47476268 |
tatttcacttatcagacttcttttccccgcttccaagctgagaacttggtcaagaacaaggttatatatgataggattgaaagtcttagcaagaggcatg |
47476169 |
T |
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| Q |
205 |
agtgcacttctgctcagttagcattagcatggatactccaacaaggccatgatgttgtgcctatacctgtcgagtgacaa |
284 |
Q |
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| T |
47476168 |
gatgcactactgctcaattagcattagcatgggtactccaacaaggcaaggatgttgtgcctattcctggtgagtgacaa |
47476089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 24802469 - 24802193
Alignment:
| Q |
23 |
catccttatctgttttt-ctcacatgaatgatgtttaaattcttgtataaaattaagg--ct---------------tttatgttgttttctgatatgat |
104 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| || ||||||||||||||| ||||| |
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| T |
24802469 |
catccttatctgttttttctcacatgaatgatgtttaaagtcttctataaaattaaggacctttcctttttaaaaaatttatgttgttttct--aatgat |
24802372 |
T |
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| Q |
105 |
catttcactattcaggctactcatcctcgcttccaagccgagaacttggacaagaacaaaaatttatatgatcgaattgaaagtcttgccaagaaacatg |
204 |
Q |
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| T |
24802371 |
tatttcacttatcagacttcttttccccgcttccaagctgagaacttggtcaagaacaaggttatatatgataggattgaaagtcttagcaagaagcatg |
24802272 |
T |
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| Q |
205 |
agtgcacttctgctcagttagcattagcatggatactccaacaaggccatgatgttgtgcctatacctgtcgagtgacaa |
284 |
Q |
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| T |
24802271 |
gatgcactactgctcaattagcattagcatgg-tactccaacaaggcaaggatgttgtgcctattcctggtgagtgacaa |
24802193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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