View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_high_1 (Length: 571)

Name: NF10174_high_1
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_high_1
NF10174_high_1
[»] chr8 (4 HSPs)
chr8 (1-304)||(15190455-15190758)
chr8 (299-558)||(15195735-15195994)
chr8 (62-134)||(34174836-34174908)
chr8 (42-120)||(15744283-15744361)
[»] chr4 (7 HSPs)
chr4 (362-556)||(8999218-8999417)
chr4 (188-303)||(7629167-7629285)
chr4 (231-303)||(7606782-7606854)
chr4 (188-303)||(7615778-7615896)
chr4 (188-303)||(7637613-7637731)
chr4 (188-303)||(7655595-7655710)
chr4 (73-125)||(7399197-7399249)
[»] chr6 (1 HSPs)
chr6 (42-124)||(11969636-11969718)
[»] chr3 (4 HSPs)
chr3 (369-519)||(40147022-40147172)
chr3 (249-300)||(8103025-8103076)
chr3 (404-493)||(8102799-8102888)
chr3 (257-305)||(40146913-40146961)
[»] scaffold0190 (1 HSPs)
scaffold0190 (65-124)||(5160-5219)
[»] chr7 (1 HSPs)
chr7 (188-303)||(8935556-8935674)


Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 15190455 - 15190758
Alignment:
Q  1 tgttgccgacattctaggatccacctaccttccttccgttttccactccttctttccacttaacggagttataaactacgaaggtacatcacatccattg 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15190455 tgttgccgacattctaggatccacctaccttccttcctttttccactccttctttccacttaacggagttataaactacgaaggtacatcacatccattg 15190554  T
Q  101 cttgcattccaagtaacagagttaagtgacggtacttttgttagttggacaatgaaccatgtagtccttgatggaatgtccaattcacatttcatcaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15190555 cttgcattccaagtaacagagttaagtgacggtacttttgttagttggacaatgaaccatgtagtccttgatggaatgtccaattcacatttcatcaatt 15190654  T
Q  201 cacttgctgaaatctcacgtggttcttgccatcaaatatctttacctccaacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttcc 300  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15190655 cactggctgaaatctcacgtggttcttgccatcaaatatctgtacctccaacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttcc 15190754  T
Q  301 tttt 304  Q
    ||||    
T  15190755 tttt 15190758  T

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Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 299 - 558
Target Start/End: Original strand, 15195735 - 15195994
Alignment:
Q  299 ccttttatgataaagacaccaaaaattaagatccgttctgatgaagaacaactcatcccaactgagagaatattccattttacaaaggagaataccgcga 398  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15195735 ccttttatgataaatacaccacaaattaagatccgttttgatgaagaacaactcatcccaactgagagaatattccattttacaaaggagaatatcgcga 15195834  T
Q  399 gactcaaattaaaagccaatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcacccacctttggcgctcagtgatccgttccaaaca 498  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15195835 gactcaaattaaaagctaatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcacccacctttggcgctcagtgatccgttccaaaca 15195934  T
Q  499 acttaacccgcatgaagaagtgaattttgtgttatgtataagtgttagatcaaggttggt 558  Q
    |||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15195935 actggactcgcatgaagaagtgaattttgtgttatgtataagtgttagatcaaggttggt 15195994  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 34174908 - 34174836
Alignment:
Q  62 aacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaagtgacggta 134  Q
    |||||||||| ||||||| ||||||||||||| |||||||||||| | |||||||||||||||| ||| ||||    
T  34174908 aacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggta 34174836  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 15744283 - 15744361
Alignment:
Q  42 tccactccttctttccacttaacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacaga 120  Q
    ||||||| || |||||| |||||||||| | |||||||||||| ||||||   ||||| |||||| | |||||||||||    
T  15744283 tccactcattttttccatttaacggagtgaaaaactacgaagggacatcaatgccattacttgcagtacaagtaacaga 15744361  T

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Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 362 - 556
Target Start/End: Complemental strand, 8999417 - 8999218
Alignment:
Q  362 gagagaatattccattttacaaaggagaataccgcgagactcaaattaaaagccaatatagaagctggcac------caacaaaatatcttccatgcaag 455  Q
    |||||||||||||||||||| |||||||||| | ||||||||||||||||||| || ||||| || || ||      |||||||||||||||| ||||||    
T  8999417 gagagaatattccattttactaaggagaatatcacgagactcaaattaaaagcgaacatagaggccggtactagtatcaacaaaatatcttccctgcaag 8999318  T
Q  456 cgctttgcacccacctttggcgctcagtgatccgttccaaacaacttaacccgcatgaagaagtgaattttgtgttatgtataagtgttagatcaaggtt 555  Q
    |||||  ||| |||||||||||||| ||||||||||| ||||||||| |||  || |||||||| ||||||||| ||||||| || ||||||| ||||||    
T  8999317 cgctta-cactcacctttggcgctctgtgatccgttcaaaacaacttgacctacaagaagaagttaattttgtgatatgtattagcgttagattaaggtt 8999219  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 188 - 303
Target Start/End: Complemental strand, 7629285 - 7629167
Alignment:
Q  188 catttcatcaattcacttgctgaaatctcacgtggttcttgccatca---aatatctttacctccaacacttgaacgtttatttccaaatggaattcaac 284  Q
    |||||||||||||||   ||||||||||||||| ||| ||| |||||   |||||||  ||||||||||  ||||||||  ||||||||||| |||||||    
T  7629285 catttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatggtattcaac 7629186  T
Q  285 gtcccatacgatttccttt 303  Q
     ||||||||||||||||||    
T  7629185 ttcccatacgatttccttt 7629167  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 7606854 - 7606782
Alignment:
Q  231 atcaaatatctttacctccaacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttccttt 303  Q
    ||||||||||   ||| |||||||| || ||||  ||||||||||| ||||||| ||||||||||||||||||    
T  7606854 atcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaacttcccatacgatttccttt 7606782  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 303
Target Start/End: Complemental strand, 7615896 - 7615778
Alignment:
Q  188 catttcatcaattcacttgctgaaatctcacgtggttcttgccatca---aatatctttacctccaacacttgaacgtttatttccaaatggaattcaac 284  Q
    |||||||||||||||   |||||||| |||||| ||| ||| |||||   |||||||  ||| |||||||| || ||||  |||||||||||  ||||||    
T  7615896 catttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaac 7615797  T
Q  285 gtcccatacgatttccttt 303  Q
      |||||||||||||||||    
T  7615796 agcccatacgatttccttt 7615778  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 303
Target Start/End: Complemental strand, 7637731 - 7637613
Alignment:
Q  188 catttcatcaattcacttgctgaaatctcacgtggttcttgccatca---aatatctttacctccaacacttgaacgtttatttccaaatggaattcaac 284  Q
    ||||||||||||||    ||||||||||||||| ||| ||| |||||   |||||||  ||| |||||||| || ||||  |||||||||||  ||||||    
T  7637731 catttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaac 7637632  T
Q  285 gtcccatacgatttccttt 303  Q
    | || ||||||||||||||    
T  7637631 ggcctatacgatttccttt 7637613  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 303
Target Start/End: Original strand, 7655595 - 7655710
Alignment:
Q  188 catttcatcaattcacttgctgaaatctcacgtggttcttgccatcaaatatctttacctccaacacttgaacgtttatttccaaatggaattcaacgtc 287  Q
    ||||||||||||||    |||||||| |||||||||| |   ||||||||||||    | ||||| || || ||||  |||||||||||||||||||| |    
T  7655595 catttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctggagcgttggtttccaaatggaattcaacgac 7655694  T
Q  288 ccatacgatttccttt 303  Q
    | ||||||||||||||    
T  7655695 ctatacgatttccttt 7655710  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 7399249 - 7399197
Alignment:
Q  73 aaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaa 125  Q
    |||||||||||| |||||||| ||| | |||||| | ||||||||||||||||    
T  7399249 aaactacgaagggacatcacaaccactacttgcagtacaagtaacagagttaa 7399197  T

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Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 11969718 - 11969636
Alignment:
Q  42 tccactccttctttccacttaacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagtta 124  Q
    ||||||| || ||||||||||||||||||| |||||| ||||| |||||| | |||||||||||| |||||||||||||||||    
T  11969718 tccactcattttttccacttaacggagttagaaactatgaagggacatcagagccattgcttgcagtccaagtaacagagtta 11969636  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 369 - 519
Target Start/End: Original strand, 40147022 - 40147172
Alignment:
Q  369 tattccattttacaaaggagaataccgcgagactcaaattaaaagccaatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcaccca 468  Q
    |||||||||| ||||||||||| | |||   ||| ||||| |||||||| || ||   ||| |||||||||||||| ||| | ||| | ||||  || ||    
T  40147022 tattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcactttttacaca 40147121  T
Q  469 cctttggcgctcagtgatccgttccaaacaacttaacccgcatgaagaagt 519  Q
     ||||||||||| |||||||||||||||||| || |||| || ||||||||    
T  40147122 tctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagt 40147172  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 8103076 - 8103025
Alignment:
Q  249 caacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttcc 300  Q
    |||||||||||||||  |||||| |||| |||||| ||||||||||||||||    
T  8103076 caacacttgaacgttggtttccagatggtattcaatgtcccatacgatttcc 8103025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 493
Target Start/End: Complemental strand, 8102888 - 8102799
Alignment:
Q  404 aaattaaaagccaatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcacccacctttggcgctcagtgatccgttcc 493  Q
    ||||| ||||||||  ||||| | || || ||||||||||||||| | ||||| ||||   | ||||||||| |||||||||||||||||    
T  8102888 aaattgaaagccaacttagaaacgggtacgaacaaaatatcttcccttcaagcactttttgcacacctttggtgctcagtgatccgttcc 8102799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 40146913 - 40146961
Alignment:
Q  257 gaacgtttatttccaaatggaattcaacgtcccatacgatttcctttta 305  Q
    |||||||  ||||||| ||| ||||||| ||||||||||||||||||||    
T  40146913 gaacgttggtttccaagtggtattcaacatcccatacgatttcctttta 40146961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 5219 - 5160
Alignment:
Q  65 ggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagtta 124  Q
    ||||||| |||||||||||| |||||||| ||||| |||||| |||||||||| ||||||    
T  5219 ggagttaaaaactacgaaggaacatcacaaccattacttgcaatccaagtaacggagtta 5160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 303
Target Start/End: Original strand, 8935556 - 8935674
Alignment:
Q  188 catttcatcaattcacttgctgaaatctcacgtggttcttgccatc---aaatatctttacctccaacacttgaacgtttatttccaaatggaattcaac 284  Q
    ||||||||||||||    ||||||||||||||| ||| ||| ||||   ||||||||  |||||||||||| |||||||  |||||  ||||  ||||||    
T  8935556 catttcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaacgttggtttccggatggtgttcaac 8935655  T
Q  285 gtcccatacgatttccttt 303  Q
    | || ||||||||||||||    
T  8935656 ggccaatacgatttccttt 8935674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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