View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_high_16 (Length: 320)
Name: NF10174_high_16
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 319
Target Start/End: Complemental strand, 8300905 - 8300600
Alignment:
| Q |
14 |
aggagtattcgaagaagaatgtgttggctgagctaattaaatttatggaaaaagagaaacaattcgagaagaagggagaaaatctggatagtcttgacga |
113 |
Q |
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| T |
8300905 |
aggagtattcgaagaagaatgtgttggctgagctaattaaatttatggaaaaagagaaacaattcgagaagaagggagaaaatctggatagtcttgacga |
8300806 |
T |
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| Q |
114 |
aaaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtct |
213 |
Q |
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| T |
8300805 |
aaaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtct |
8300706 |
T |
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| Q |
214 |
atgaaggatagagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatggagtataaaatgaagtgtctcgaaatctttacgcaga |
313 |
Q |
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| T |
8300705 |
atggaggatagagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatggagtacaaaatgaagtgtctcgaaatctttacgcaga |
8300606 |
T |
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| Q |
314 |
tctatc |
319 |
Q |
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|||||| |
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| T |
8300605 |
tctatc |
8300600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 307
Target Start/End: Complemental strand, 8297317 - 8297034
Alignment:
| Q |
24 |
gaagaagaatgtgttggctgagctaattaaatttatggaaaaagagaaacaattcgagaagaagggagaaaatctggatagtcttgacgaaaaatggatg |
123 |
Q |
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| T |
8297317 |
gaagatgaatgtgttggctgagctaaatacatttatggaaaaagcgaaacaattggagaagaagggagaaaatctggataatctggatgaaaaatggatg |
8297218 |
T |
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| Q |
124 |
ataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtctatgaaggata |
223 |
Q |
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| T |
8297217 |
ataattaaggtggctgtgatggataattctttggtgtttattagatatttcaaaaacttgatgctgaattttctcgagtctatcaagtctatggaggata |
8297118 |
T |
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| Q |
224 |
gagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatggagtataaaatgaagtgtctcgaaatcttta |
307 |
Q |
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| T |
8297117 |
gaatggaattaaaagggaacttagaaagtatcagagttgaaatgcaaactatggagggtaaaatgaattttctcaaaagcttta |
8297034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 18279328 - 18279613
Alignment:
| Q |
22 |
tcgaagaagaatgtgttggctgagctaattaaatttatggaaaaagagaaacaattcgagaagaagggagaaaatctggatagtcttgacgaaaaatgga |
121 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||| ||||||||||||| |||||| | | |||||| |
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| T |
18279328 |
tcgaagaacaatgtgttggctgagctaaataaatttatggaaaaagataatcaattggagaagaaggttgaaaatctggataatcttgatgtacaatgga |
18279427 |
T |
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| Q |
122 |
tgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtctatgaagga |
221 |
Q |
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| T |
18279428 |
tgataatcaatgtggcaaagtttgataatattttgacgtatattggatatatcaaaagctttacgctgaattttctcgagtctattaagtctttggagga |
18279527 |
T |
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| Q |
222 |
tagagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatggagtataaaatgaagtgtctcgaaatcttta |
307 |
Q |
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|||| |||||||||||||||||| ||||||| ||| |||||||| ||||||||||||| |||| |||| |||||| ||| ||||| |
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| T |
18279528 |
tagaatggaattaaaagggaacttagaaagtgtcaaagttgaaaagcaaactatggaggataatttgaattgtctcaaaagcttta |
18279613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 115 - 307
Target Start/End: Complemental strand, 1145428 - 1145236
Alignment:
| Q |
115 |
aaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtcta |
214 |
Q |
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|||||||||||||| || |||| | ||| |||||| |||| |||||||||| ||| |||| |||||| ||||||||||| ||||||||||||| | |
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| T |
1145428 |
aaatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacactgaattttctcgagtctatcaagtatc |
1145329 |
T |
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| Q |
215 |
tgaaggatagagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatggagtataaaatgaagtgtctcgaaatcttta |
307 |
Q |
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| T |
1145328 |
tggaggatagaatggaattaaaagggaacttagaaagtatcagaattgaaatgcaaactatggaggataaaatgatttggctcgaaagcttta |
1145236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 21120553 - 21120613
Alignment:
| Q |
247 |
gaaagtatcagagttgaaatgcaaactatggagtataaaatgaagtgtctcgaaatcttta |
307 |
Q |
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|||||| |||||||||||||||||||||||||| ||| | | | ||||||| ||||||||| |
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| T |
21120553 |
gaaagtctcagagttgaaatgcaaactatggaggatagactcatgtgtctcaaaatcttta |
21120613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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