View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_high_18 (Length: 283)

Name: NF10174_high_18
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_high_18
NF10174_high_18
[»] chr4 (1 HSPs)
chr4 (1-283)||(52863924-52864206)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 52864206 - 52863924
Alignment:
Q  1 agacagcaagattaactggttaagttttgaagttacttgacttcgatcttgagaactacgcctacgcctctctaaacccttttcatatggccacggcggt 100  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52864206 agacagcaaggttaactggttaagtttttaagttacttgacttcgatcttcagaactacgcctacgcctctctaaacccttttcatatggccacggcggt 52864107  T
Q  101 agagccaattccaaacggcactcttcaatcagaatcatatacaatctttgacgccgccgcaaatcctacggatgaatctgaatccgagaagagatggcca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52864106 agagccaattccaaacggcactcttcaatcagaatcatatacaatctttgacgccgccgcgaatcctacggatgaatctgaatccgagaagagatggcca 52864007  T
Q  201 ggttggcctggtcactgtgttttccggctaattgttcccgttgttaaagttggcatcatcataggccgtaaaggggaattgat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52864006 ggttggcctggtcactgtgttttccggctaattgttcccgttgttaaagttggcatcatcataggccgtaaaggggaattgat 52863924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University